Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AYR57_RS04245 | Genome accession | NZ_CP014933 |
| Coordinates | 849452..849973 (+) | Length | 173 a.a. |
| NCBI ID | WP_014214545.1 | Uniprot ID | G8PE86 |
| Organism | Pediococcus claussenii strain TMW 2.53 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 844452..854973
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYR57_RS04235 (AYR57_04230) | gyrA | 846489..848933 (+) | 2445 | WP_231952014.1 | DNA gyrase subunit A | - |
| AYR57_RS04240 (AYR57_04235) | rpsF | 849112..849402 (+) | 291 | WP_014214544.1 | 30S ribosomal protein S6 | - |
| AYR57_RS04245 (AYR57_04240) | ssb | 849452..849973 (+) | 522 | WP_014214545.1 | single-stranded DNA-binding protein | Machinery gene |
| AYR57_RS04250 (AYR57_04245) | rpsR | 849993..850229 (+) | 237 | WP_014214546.1 | 30S ribosomal protein S18 | - |
| AYR57_RS04255 (AYR57_04250) | - | 850423..852426 (+) | 2004 | WP_014214547.1 | DHH family phosphoesterase | - |
| AYR57_RS04260 (AYR57_04255) | rplI | 852433..852885 (+) | 453 | WP_014214548.1 | 50S ribosomal protein L9 | - |
| AYR57_RS04265 (AYR57_04260) | dnaB | 852909..854306 (+) | 1398 | WP_014214549.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19043.53 Da Isoelectric Point: 4.4862
>NTDB_id=175177 AYR57_RS04245 WP_014214545.1 849452..849973(+) (ssb) [Pediococcus claussenii strain TMW 2.53]
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVSFTLAVNRQFTNQQGEREADFINCVMWRKSAENFANFTRKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVADNFSLLESRSQSEQRQSNEGGFSQPAPSNNNQSSGNNNPFDAGQNSNGAQQPSSNPNDPFADG
GQSIDISDDDLPF
Nucleotide
Download Length: 522 bp
>NTDB_id=175177 AYR57_RS04245 WP_014214545.1 849452..849973(+) (ssb) [Pediococcus claussenii strain TMW 2.53]
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
ATGATTAACCGAACAGTACTCGTTGGACGCTTAACACGAGATCCTGAGTTACGATACACAGGCAGTGGCGCAGCTGTTGT
TTCTTTCACACTTGCTGTTAACCGGCAATTCACTAACCAACAAGGTGAACGTGAAGCCGATTTTATTAACTGCGTAATGT
GGAGAAAGTCAGCTGAAAACTTTGCTAATTTTACTCGCAAAGGTTCATTAGTGGGAATTGACGGCCGTATTCAAACGCGT
AACTACGAAAACCAACAAGGTCAACGTGTTTATGTTACTGAAGTAGTTGCCGATAATTTCTCACTTCTTGAATCTCGTTC
ACAATCTGAACAACGTCAGAGTAACGAAGGCGGATTTAGTCAGCCTGCCCCTTCTAACAACAATCAATCGTCAGGTAATA
ACAATCCATTTGACGCGGGTCAGAACAGTAATGGTGCACAACAACCTAGTTCTAATCCGAATGATCCATTTGCGGATGGT
GGTCAATCGATTGATATTTCTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
69.54 |
100 |
0.699 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.272 |
0.37 |