Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AYR60_RS01490 Genome accession   NZ_CP014872
Coordinates   305310..305831 (-) Length   173 a.a.
NCBI ID   WP_054646501.1    Uniprot ID   A0A0R2JM53
Organism   Fructilactobacillus lindneri strain TMW 1.1993     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300310..310831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR60_RS01470 (AYR60_01470) dnaB 300932..302344 (-) 1413 WP_054646498.1 replicative DNA helicase -
  AYR60_RS01475 (AYR60_01475) rplI 302378..302830 (-) 453 WP_054646499.1 50S ribosomal protein L9 -
  AYR60_RS01480 (AYR60_01480) - 302879..304906 (-) 2028 WP_078775185.1 DHH family phosphoesterase -
  AYR60_RS01485 (AYR60_01485) rpsR 305018..305272 (-) 255 WP_054646500.1 30S ribosomal protein S18 -
  AYR60_RS01490 (AYR60_01490) ssb 305310..305831 (-) 522 WP_054646501.1 single-stranded DNA-binding protein Machinery gene
  AYR60_RS01495 (AYR60_01495) rpsF 305858..306154 (-) 297 WP_054646502.1 30S ribosomal protein S6 -
  AYR60_RS01500 (AYR60_01500) gyrA 306359..308878 (-) 2520 WP_056997770.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19054.54 Da        Isoelectric Point: 4.5893

>NTDB_id=174937 AYR60_RS01490 WP_054646501.1 305310..305831(-) (ssb) [Fructilactobacillus lindneri strain TMW 1.1993]
MINTVVLTGRLTRDVDLRYTQSGAAVGTFTLAVDRRFTNANGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRIQTR
NYENKQGQRVYVTEVVVENFTLLEPRQNGGQQNNNNGNQAPQQNPFGTPKNNNFDNNNSSNQSNNNGNGGDNSADPFANS
GDQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=174937 AYR60_RS01490 WP_054646501.1 305310..305831(-) (ssb) [Fructilactobacillus lindneri strain TMW 1.1993]
ATGATTAATACCGTTGTCCTAACTGGACGTTTAACACGTGATGTTGATTTGCGATACACCCAAAGCGGCGCAGCAGTGGG
AACATTTACCTTAGCTGTCGACCGTCGTTTCACCAATGCGAATGGTGATCGGGAAGCTGACTTCGTCAATTGTGTTATTT
GGCGTAAATCAGCTGAAAATCTTGCTAACTTCGTACACAAAGGTTCGCTTTTAGGAGTTGAAGGTCGAATTCAGACTAGA
AACTATGAAAATAAGCAGGGCCAACGTGTTTATGTAACCGAAGTAGTTGTTGAAAACTTTACTTTGTTGGAACCACGTCA
AAATGGTGGTCAACAAAATAACAACAATGGCAACCAAGCTCCTCAACAAAATCCATTTGGAACTCCTAAGAATAATAACT
TTGATAACAACAATAGTAGTAATCAGAGTAATAATAATGGTAATGGCGGAGACAATTCTGCTGATCCATTTGCTAATTCT
GGAGACCAAATCGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2JM53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.641

100

0.676
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.377

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364

Multiple sequence alignment