Detailed information NTG0174889

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A3218_RS17265
• Genome accession: NZ_CP014867
• Coordinates: 3918132..3919004 (-)
• Length: 290 a.a.
• NCBI ID: WP_062824569.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain 189 isolate 189
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3913132..3924004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A3218_RS17235 (A3218_17235)	-	3913979..3915415 (-)	1437	WP_009045674.1	undecaprenyl-phosphate glucose phosphotransferase	-
A3218_RS17240 (A3218_17240)	-	3915870..3916340 (+)	471	WP_062824566.1	hypothetical protein	-
A3218_RS17245 (A3218_17245)	-	3916337..3917026 (+)	690	WP_009045672.1	energy-coupling factor ABC transporter permease	-
A3218_RS17250 (A3218_17250)	-	3917092..3917307 (+)	216	WP_062824567.1	hypothetical protein	-
A3218_RS17255 (A3218_17255)	yacG	3917312..3917515 (-)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
A3218_RS17260 (A3218_17260)	coaE	3917512..3918135 (-)	624	WP_062824568.1	dephospho-CoA kinase	-
A3218_RS17265 (A3218_17265)	pilD	3918132..3919004 (-)	873	WP_062824569.1	A24 family peptidase	Machinery gene
A3218_RS17270 (A3218_17270)	pilC	3919007..3920224 (-)	1218	WP_062824570.1	type II secretion system F family protein	Machinery gene
A3218_RS17275 (A3218_17275)	-	3920588..3921004 (+)	417	WP_007924673.1	pilin	-
A3218_RS17280 (A3218_17280)	-	3921290..3921646 (+)	357	WP_062824571.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32122.24 Da
• Isoelectric Point: 7.4003

>NTDB_id=174889 A3218_RS17265 WP_062824569.1 3918132..3919004(-) (pilD) [Pseudomonas chlororaphis strain 189 isolate 189]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPVGPTYNLLLPHSQCPHCAHPIR
IWENIPLLSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=174889 A3218_RS17265 WP_062824569.1 3918132..3919004(-) (pilD) [Pseudomonas chlororaphis strain 189 isolate 189]
ATGTCATTGACTGAGGTCCTGGCCAGCTATCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGTCGGGCCGACCTATAACCTGTTGCTCCCACACTCCCAGTGCCCGCACTGTGCGCACCCGATCCGC
ATCTGGGAAAACATCCCGCTGTTGAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCATGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCATTCGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCC
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTATTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCCGGAGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.846	98.621	0.531
pilD	Vibrio campbellii strain DS40M4	52.281	98.276	0.514
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	50.185	93.448	0.469
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452