Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   B14_RS09065 Genome accession   NZ_CP014842
Coordinates   1761001..1761294 (+) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1756001..1766294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS09030 (B14_01808) - 1756154..1756792 (+) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  B14_RS09035 (B14_01809) - 1756830..1757075 (-) 246 WP_003183483.1 DUF2626 domain-containing protein -
  B14_RS09040 (B14_01810) - 1757284..1757661 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  B14_RS09050 (B14_01812) - 1757903..1758742 (+) 840 WP_003183480.1 STAS domain-containing protein -
  B14_RS09055 (B14_01813) comGA 1758899..1759963 (+) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  B14_RS09060 (B14_01814) comGB 1759953..1760987 (+) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  B14_RS09065 (B14_01815) comGC 1761001..1761294 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  B14_RS09070 (B14_01816) comGD 1761300..1761737 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  B14_RS09075 comGE 1761721..1762068 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  B14_RS09080 (B14_01817) comGF 1762094..1762465 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  B14_RS09085 (B14_01818) comGG 1762478..1762843 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  B14_RS09090 (B14_01819) - 1762932..1763114 (+) 183 WP_003183456.1 YqzE family protein -
  B14_RS09095 (B14_01820) - 1763138..1763458 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  B14_RS09100 (B14_01821) tapA 1763735..1764463 (+) 729 WP_080623590.1 amyloid fiber anchoring/assembly protein TapA -
  B14_RS09105 (B14_01822) sipW 1764460..1765044 (+) 585 WP_003183449.1 signal peptidase I SipW -
  B14_RS09110 (B14_01823) tasA 1765118..1765912 (+) 795 WP_003183447.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=174658 B14_RS09065 WP_003183466.1 1761001..1761294(+) (comGC) [Bacillus licheniformis strain SCDB 14]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=174658 B14_RS09065 WP_003183466.1 1761001..1761294(+) (comGC) [Bacillus licheniformis strain SCDB 14]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment