Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   B14_RS09060 Genome accession   NZ_CP014842
Coordinates   1759953..1760987 (+) Length   344 a.a.
NCBI ID   WP_011198115.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1754953..1765987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS09020 (B14_01806) - 1755450..1755764 (+) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  B14_RS09025 (B14_01807) - 1755825..1755998 (-) 174 WP_003183486.1 DUF2759 domain-containing protein -
  B14_RS09030 (B14_01808) - 1756154..1756792 (+) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  B14_RS09035 (B14_01809) - 1756830..1757075 (-) 246 WP_003183483.1 DUF2626 domain-containing protein -
  B14_RS09040 (B14_01810) - 1757284..1757661 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  B14_RS09050 (B14_01812) - 1757903..1758742 (+) 840 WP_003183480.1 STAS domain-containing protein -
  B14_RS09055 (B14_01813) comGA 1758899..1759963 (+) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  B14_RS09060 (B14_01814) comGB 1759953..1760987 (+) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  B14_RS09065 (B14_01815) comGC 1761001..1761294 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  B14_RS09070 (B14_01816) comGD 1761300..1761737 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  B14_RS09075 comGE 1761721..1762068 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  B14_RS09080 (B14_01817) comGF 1762094..1762465 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  B14_RS09085 (B14_01818) comGG 1762478..1762843 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  B14_RS09090 (B14_01819) - 1762932..1763114 (+) 183 WP_003183456.1 YqzE family protein -
  B14_RS09095 (B14_01820) - 1763138..1763458 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  B14_RS09100 (B14_01821) tapA 1763735..1764463 (+) 729 WP_080623590.1 amyloid fiber anchoring/assembly protein TapA -
  B14_RS09105 (B14_01822) sipW 1764460..1765044 (+) 585 WP_003183449.1 signal peptidase I SipW -
  B14_RS09110 (B14_01823) tasA 1765118..1765912 (+) 795 WP_003183447.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39737.95 Da        Isoelectric Point: 9.3543

>NTDB_id=174657 B14_RS09060 WP_011198115.1 1759953..1760987(+) (comGB) [Bacillus licheniformis strain SCDB 14]
MKIKMKWPVREQADLLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=174657 B14_RS09060 WP_011198115.1 1759953..1760987(+) (comGB) [Bacillus licheniformis strain SCDB 14]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCACAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.656

93.895

0.532

Multiple sequence alignment