Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ATSB10_RS10565 Genome accession   NZ_CP014841
Coordinates   2305503..2305907 (-) Length   134 a.a.
NCBI ID   WP_026107406.1    Uniprot ID   -
Organism   Dyella thiooxydans strain ATSB10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2300503..2310907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATSB10_RS10550 (ATSB10_21650) - 2302411..2304441 (-) 2031 WP_063672657.1 methyl-accepting chemotaxis protein -
  ATSB10_RS10555 (ATSB10_21660) - 2304563..2305102 (-) 540 WP_017462745.1 chemotaxis protein CheW -
  ATSB10_RS10560 (ATSB10_21670) - 2305099..2305470 (-) 372 WP_017462746.1 response regulator -
  ATSB10_RS10565 (ATSB10_21680) pilG 2305503..2305907 (-) 405 WP_026107406.1 response regulator Regulator
  ATSB10_RS10570 (ATSB10_21690) gshB 2306228..2307205 (+) 978 WP_063672659.1 glutathione synthase -
  ATSB10_RS10575 (ATSB10_21700) - 2307202..2308065 (+) 864 WP_236886401.1 energy transducer TonB -
  ATSB10_RS10580 (ATSB10_21710) - 2308107..2308685 (+) 579 WP_063672663.1 YqgE/AlgH family protein -
  ATSB10_RS10585 (ATSB10_21720) ruvX 2308696..2309127 (+) 432 WP_063672665.1 Holliday junction resolvase RuvX -
  ATSB10_RS10590 (ATSB10_21730) - 2309153..2310079 (+) 927 WP_063672667.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14603.08 Da        Isoelectric Point: 9.1307

>NTDB_id=174610 ATSB10_RS10565 WP_026107406.1 2305503..2305907(-) (pilG) [Dyella thiooxydans strain ATSB10]
MNLNVSANGLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPLFRSTPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVGAAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=174610 ATSB10_RS10565 WP_026107406.1 2305503..2305907(-) (pilG) [Dyella thiooxydans strain ATSB10]
GTGAACTTGAACGTGAGTGCTAACGGTCTGGCCGGTCTGAAGGTCATGGTGATCGACGACTCCAAGACCATCCGGCGCAC
CGCCGAGACCTTGCTGAAGAAGGAAGGCTGCGACGTGCTGACCGCCGTCGACGGCTTCGAGGCGCTGGCCAAGATCTCGG
ACCAGAAACCGGCGATCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGATCAAGAAC
AACCCGCTGTTCCGCTCCACGCCTGTCATCATGCTCAGCTCGAAGGACGGCCTGTTCGACAAGGCCCGCGGCCGCATCGT
CGGCGCCGAGCAGTACCTGACCAAGCCGTTCACGCGCGACGAGCTGCTCGGAGCGATTCACCGTCATGTCGGTGCGGCGG
CCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

93.284

0.664
  vicR Streptococcus mutans UA159

41.88

87.313

0.366

Multiple sequence alignment