Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A2G56_RS08985 Genome accession   NZ_CP014835
Coordinates   1958934..1959419 (+) Length   161 a.a.
NCBI ID   WP_062711737.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1953934..1964419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS08965 - 1954526..1955110 (+) 585 WP_062711726.1 TMEM175 family protein -
  A2G56_RS08970 - 1955127..1955945 (+) 819 WP_062711729.1 SDR family oxidoreductase -
  A2G56_RS08975 - 1956000..1956860 (+) 861 WP_062711732.1 aldo/keto reductase -
  A2G56_RS10355 - 1957051..1957245 (+) 195 Protein_1758 IS5/IS1182 family transposase -
  A2G56_RS10360 - 1957261..1958264 (-) 1004 Protein_1759 IS630 family transposase -
  A2G56_RS08980 rpsF 1958632..1958922 (+) 291 WP_062711734.1 30S ribosomal protein S6 -
  A2G56_RS08985 ssb 1958934..1959419 (+) 486 WP_062711737.1 single-stranded DNA-binding protein Machinery gene
  A2G56_RS08990 rpsR 1959455..1959694 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  A2G56_RS08995 - 1960334..1961005 (-) 672 WP_062711740.1 DUF1129 domain-containing protein -
  A2G56_RS09000 - 1961292..1962236 (-) 945 WP_062711743.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17933.59 Da        Isoelectric Point: 4.9119

>NTDB_id=174498 A2G56_RS08985 WP_062711737.1 1958934..1959419(+) (ssb) [Streptococcus halotolerans strain HTS9]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKSQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGSQSSYNGGYNNQSSNNSFSSSSQTPNFGRDESPFGNSNPMDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=174498 A2G56_RS08985 WP_062711737.1 1958934..1959419(+) (ssb) [Streptococcus halotolerans strain HTS9]
ATGATTAATAATGTGGTACTTGTTGGTCGTATGACCAGAGATGCAGAACTTCGCTACACACCAAGCAATGTTGCTGTTGC
TACTTTCTCTCTTGCAGTTAACCGTAACTTCAAGAGTCAAAATGGTGAACGTGAAGCTGATTTCATTAACTGTGTGATTT
GGCGCCAGTCAGCTGAGAATTTGGCTAATTGGGCTAAAAAAGGTGCTTTAATTGGTATCACTGGACGTATCCAGACGCGT
AATTATGAAAATCAACAAGGCCAACGCGTTTATGTAACAGAAGTTGTTGCGGAAAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCTTATAATGGTGGTTATAATAACCAATCATCAAATAACAGTTTTTCATCTTCAT
CACAAACACCAAACTTTGGTCGAGATGAGAGCCCATTTGGTAATTCGAACCCAATGGATATCTCAGATGACGATTTACCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.634
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.098

100

0.615
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

67.702

0.36

Multiple sequence alignment