Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   A2G56_RS05765 Genome accession   NZ_CP014835
Coordinates   1279382..1280428 (-) Length   348 a.a.
NCBI ID   WP_062710232.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274382..1285428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05755 - 1276943..1278145 (+) 1203 WP_062710227.1 IS110 family transposase -
  A2G56_RS05760 amiF 1278447..1279382 (-) 936 WP_062710229.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05765 oppD 1279382..1280428 (-) 1047 WP_062710232.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05770 - 1280443..1281474 (-) 1032 WP_062710235.1 ABC transporter permease -
  A2G56_RS05775 - 1281485..1282399 (-) 915 WP_062710238.1 ABC transporter permease -
  A2G56_RS05780 - 1282512..1284173 (-) 1662 WP_062710240.1 peptide ABC transporter substrate-binding protein -
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38534.12 Da        Isoelectric Point: 5.0292

>NTDB_id=174473 A2G56_RS05765 WP_062710232.1 1279382..1280428(-) (oppD) [Streptococcus halotolerans strain HTS9]
MTQENILEVKHLHVDFHTYAGEVKAIREVNFELKKGETLAIVGESGSGKSVTTKTLMGLSAKNAEISGDILFKNRNLNDL
KEEDWVKIRGNEIAMIFQDPMTSLDPTMKIGMQIAEPIMLHEKVSKKEALDRALELMKSVGIPNAEEHINDYPHQWSGGM
RQRAVIAVALAGNPEILIADEPTTALDVTIQAQILNLMKDIQQKMSSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTAAGALQSIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPMFKVSKTHYAATWLL
DERAPEITPPPQILKRWAKWQDKNGGAN

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=174473 A2G56_RS05765 WP_062710232.1 1279382..1280428(-) (oppD) [Streptococcus halotolerans strain HTS9]
ATGACGCAGGAAAATATTTTAGAAGTTAAACATCTTCATGTTGATTTCCACACTTATGCCGGTGAAGTCAAAGCTATTCG
TGAAGTTAACTTTGAACTTAAAAAGGGTGAGACACTTGCCATTGTAGGTGAGTCTGGCTCAGGTAAATCTGTAACAACGA
AGACTCTCATGGGATTATCGGCAAAAAATGCTGAAATTTCTGGTGATATTCTTTTTAAAAATCGTAATCTTAATGATTTG
AAAGAAGAAGATTGGGTTAAAATCCGTGGCAATGAAATTGCTATGATTTTCCAAGATCCTATGACAAGTCTTGATCCTAC
AATGAAAATTGGCATGCAAATTGCTGAGCCAATTATGCTGCACGAGAAAGTATCCAAAAAAGAAGCTTTGGATCGTGCAC
TTGAATTGATGAAAAGTGTCGGTATTCCAAATGCCGAAGAACATATTAATGATTACCCACATCAATGGTCAGGAGGCATG
CGTCAGCGTGCAGTTATCGCTGTTGCACTAGCTGGTAATCCTGAAATTCTGATTGCGGATGAGCCCACAACAGCACTAGA
TGTGACCATCCAAGCGCAAATCTTGAATTTGATGAAAGACATTCAGCAAAAAATGTCAAGTTCTATTATTTTCATCACCC
ATGATTTAGGTGTTGTTGCTGGTATGGCTGACCGTGTTGCTGTTATGTATGCAGGTAAGATTGTCGAGTATGGTACGGTT
GATGAGGTATTCTATAACCCACAGCATCCTTATACTTGGGGTCTGTTGAATTCAATGCCTACTACCGATACAGCTGCGGG
AGCACTTCAGTCAATTCCGGGAACGCCTCCAGATTTGCTGAATCCTCCAAAAGGGGATGCTTTTGCGGCACGTAATGAAT
TTGCCTTAGACATCGACCACGAAGAAGAACCACCAATGTTTAAGGTATCAAAAACACACTATGCAGCAACATGGCTATTG
GACGAAAGAGCTCCTGAAATAACACCCCCACCACAAATTTTAAAACGTTGGGCTAAATGGCAAGACAAAAACGGAGGGGC
TAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

82.319

99.138

0.816
  amiE Streptococcus salivarius strain HSISS4

56.061

94.828

0.532
  amiE Streptococcus thermophilus LMG 18311

55.455

94.828

0.526
  amiE Streptococcus thermophilus LMD-9

55.455

94.828

0.526

Multiple sequence alignment