Detailed information NTG0174472

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: A2G56_RS05760
• Genome accession: NZ_CP014835
• Coordinates: 1278447..1279382 (-)
• Length: 311 a.a.
• NCBI ID: WP_062710229.1
• Uniprot ID: -
• Organism: Streptococcus halotolerans strain HTS9
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1275595..1278145	1278447..1279382	flank	302

Gene organization within MGE regions

Location: 1275595..1279382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2G56_RS05755	-	1276943..1278145 (+)	1203	WP_062710227.1	IS110 family transposase	-
A2G56_RS05760	amiF	1278447..1279382 (-)	936	WP_062710229.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35227.32 Da
• Isoelectric Point: 7.3686

>NTDB_id=174472 A2G56_RS05760 WP_062710229.1 1278447..1279382(-) (amiF) [Streptococcus halotolerans strain HTS9]
MENTRKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINDGEIIFNGEKISHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKTERDEKVQRLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHDKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTKSLLSAIPEPDPEKERMRVHQVYDPQAELDGQERTMHEITPGHFVLATEEEAKIFKEQSKK

Nucleotide

• Length: 936 bp

>NTDB_id=174472 A2G56_RS05760 WP_062710229.1 1278447..1279382(-) (amiF) [Streptococcus halotolerans strain HTS9]
ATGGAAAACACCAGAAAAAAATTAGTAGAATTAAAAAATGTTTCCCTCACATTTAACAAAGGGAAATCCAATGAAGTTAA
AGCGATCAACAATGTTAGCTTTGATATCTATGAAGGTGAGGTCTTTGGGCTAGTTGGTGAATCTGGTTCAGGTAAAACAA
CAGTCGGTCGTGCTATTTTAAAACTTTATGATATTAACGATGGGGAAATCATCTTTAATGGTGAAAAAATCTCTCATCTT
AAAGGAAAGGCACAACATAATTTCCGAAAACAAGCTCAAATGATTTTCCAGGATCCACAAGCAAGTCTTAATGGTCGGAT
GAAAATTAGAGATATTGTTGCTGAAGGATTGGATATTCATAAGCTTGTTTCCTCTAAAACGGAACGTGATGAAAAGGTTC
AACGTCTCTTAGATTTAGTTGGGTTAAATAAAGATCACTTAACCCGTTATCCACATGAATTTTCGGGTGGACAGCGCCAA
CGTATTGGCATTGCTCGTGCTCTTGCCGTTGAGCCAAAGTTTATCATCGCTGACGAGCCTATATCTGCTTTGGATGTTTC
GATTCAAGCCCAAGTTGTTAACTTGATGCAAAAATTACAACATGATAAAGGATTGACCTACCTCTTTATCGCCCATGACT
TATCAATGGTGAAATACATCTCAGATCGTATCGGCGTTATGCATTGGGGAAAAATGCTGGAAATTGGGACTTCGGATGAT
GTCTATAATAATCCGATTCATCCATATACTAAGAGTCTTCTATCAGCTATTCCAGAGCCAGATCCTGAAAAAGAACGCAT
GCGTGTTCATCAAGTATATGATCCGCAAGCAGAATTAGATGGTCAAGAACGCACTATGCATGAAATCACACCAGGTCACT
TCGTCCTCGCTACTGAAGAAGAAGCTAAGATCTTTAAAGAACAATCTAAAAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.87	99.035	0.543
amiF	Streptococcus thermophilus LMG 18311	54.545	99.035	0.54
amiF	Streptococcus salivarius strain HSISS4	54.545	99.035	0.54