Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   A2G56_RS04930 Genome accession   NZ_CP014835
Coordinates   1126205..1127506 (-) Length   433 a.a.
NCBI ID   WP_062712455.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121205..1132506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS10200 - 1122312..1122776 (+) 465 Protein_984 IS982 family transposase -
  A2G56_RS10940 - 1122795..1123647 (-) 853 Protein_985 IS630 family transposase -
  A2G56_RS11160 - 1123690..1123752 (-) 63 Protein_986 hypothetical protein -
  A2G56_RS10455 - 1123947..1124018 (+) 72 WP_418080411.1 transposase -
  A2G56_RS10460 - 1124180..1124455 (+) 276 WP_237334389.1 transposase -
  A2G56_RS04920 hpf 1124917..1125465 (-) 549 WP_062709855.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A2G56_RS04925 - 1125546..1126196 (-) 651 WP_237334390.1 ComF family protein -
  A2G56_RS04930 comFA/cflA 1126205..1127506 (-) 1302 WP_062712455.1 DEAD/DEAH box helicase Machinery gene
  A2G56_RS04935 - 1127553..1128182 (+) 630 WP_062709860.1 YigZ family protein -
  A2G56_RS04940 cysK 1128285..1129211 (+) 927 WP_062709863.1 cysteine synthase A -
  A2G56_RS04945 - 1129263..1129622 (-) 360 WP_062709865.1 S1 RNA-binding domain-containing protein -
  A2G56_RS04950 - 1129622..1131022 (-) 1401 WP_062709867.1 Cof-type HAD-IIB family hydrolase -
  A2G56_RS04955 - 1131071..1131709 (-) 639 WP_062709869.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49515.58 Da        Isoelectric Point: 9.2514

>NTDB_id=174466 A2G56_RS04930 WP_062712455.1 1126205..1127506(-) (comFA/cflA) [Streptococcus halotolerans strain HTS9]
MKITKEKSGCWFASSNLTLEEKEIAIRMPALTKENACLTCLRCAEKIPNDWRLPDGTHYCRSCIVLGRLTEDDYLYYFPP
KPFPKTDCLRWQGQLTDYQKEVSDGLIEALHKKRDSLIHAVTGAGKTEMIYEVVAQVINKGGQVCLASPRIDVCIELYKR
LSQDFSCEIDLLHGDSEPYSGAPLVVATTHQLLKFYRCFDLILVDEVDAFPYVDNKTLYYAVKTAKKEDGLTIFMTATST
EALDRQVKKGQLRRLTLSRRFHGNPLIVPQTIWLTKLEKKVQSGKIPTKLKKYIDRQLSTEYPLLIFIPDISFGQKITEI
LRQMYPENSVGFVSSVSLNRLEEVERFRKGNLRILISTTILERGVTFPKVDVFVLLSHHRLFNSSSLIQIAGRVGRSLDR
PTGDLFFFHDGLTRAIKKTKQEIRKMNCLGGFR

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=174466 A2G56_RS04930 WP_062712455.1 1126205..1127506(-) (comFA/cflA) [Streptococcus halotolerans strain HTS9]
ATGAAAATAACAAAAGAAAAGAGTGGCTGCTGGTTTGCGAGTTCAAATCTTACTTTGGAAGAAAAAGAGATAGCTATCAG
AATGCCTGCTTTGACCAAAGAAAATGCCTGTCTTACTTGTTTGAGATGTGCAGAAAAGATTCCAAATGATTGGCGACTAC
CTGATGGGACACATTATTGTCGTTCTTGTATTGTGTTAGGTAGACTAACTGAAGATGATTATCTTTATTATTTTCCGCCA
AAACCTTTTCCTAAAACAGATTGTTTAAGATGGCAGGGCCAATTGACTGATTATCAAAAAGAGGTTTCAGATGGTCTTAT
CGAAGCCCTTCATAAGAAAAGAGATAGCCTTATTCATGCTGTAACTGGAGCTGGAAAAACGGAAATGATTTATGAAGTGG
TGGCTCAAGTGATTAATAAGGGAGGTCAAGTTTGCTTGGCCAGTCCTCGAATTGACGTCTGTATAGAATTATATAAACGC
TTAAGTCAAGACTTTTCTTGTGAGATAGATTTACTACATGGGGATTCTGAACCCTACAGTGGGGCGCCATTAGTTGTTGC
TACTACTCATCAACTCTTAAAGTTTTATAGGTGTTTTGACCTAATATTGGTCGATGAAGTCGATGCGTTTCCTTATGTTG
ATAATAAAACACTTTATTATGCTGTTAAAACCGCGAAAAAAGAGGACGGCTTAACCATCTTTATGACAGCTACGTCAACA
GAAGCACTAGACAGACAAGTTAAAAAAGGTCAGTTAAGAAGATTAACCTTATCAAGAAGGTTTCATGGCAATCCATTGAT
TGTGCCACAAACGATTTGGCTTACAAAATTGGAGAAAAAAGTGCAATCAGGGAAAATTCCTACCAAGCTAAAGAAGTATA
TTGATAGACAATTGTCGACAGAGTATCCCCTTTTGATATTCATCCCAGATATCTCGTTTGGTCAAAAGATAACAGAAATC
CTTCGCCAAATGTATCCTGAAAACAGCGTAGGTTTCGTGTCAAGTGTTAGTTTAAATCGATTAGAAGAAGTAGAAAGGTT
TAGAAAAGGAAACTTAAGAATTCTAATCTCTACGACTATTTTAGAACGTGGGGTAACCTTTCCAAAAGTTGATGTTTTTG
TCTTACTGTCGCATCATCGATTATTTAATAGCTCCAGTCTTATTCAAATAGCTGGAAGAGTTGGGCGCTCACTTGATAGA
CCGACTGGCGATTTGTTCTTTTTCCACGATGGCTTAACAAGAGCGATCAAAAAAACAAAGCAAGAAATACGAAAGATGAA
CTGCTTAGGAGGTTTCCGATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-168)

Helicase conserved C-terminal domain (Helicase_C)

(302-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

59.954

99.769

0.598
  comFA/cflA Streptococcus pneumoniae D39

59.954

99.769

0.598
  comFA/cflA Streptococcus pneumoniae R6

59.954

99.769

0.598
  comFA/cflA Streptococcus pneumoniae TIGR4

59.722

99.769

0.596
  comFA/cflA Streptococcus mitis NCTC 12261

59.722

99.769

0.596
  comFA/cflA Streptococcus mitis SK321

59.259

99.769

0.591
  comFA Lactococcus lactis subsp. cremoris KW2

48.411

94.457

0.457
  comFA Latilactobacillus sakei subsp. sakei 23K

38.686

94.919

0.367

Multiple sequence alignment