Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A1140_RS11140 Genome accession   NZ_CP014834
Coordinates   2330274..2330777 (-) Length   167 a.a.
NCBI ID   WP_103207848.1    Uniprot ID   A0A2K3ZHH0
Organism   Staphylococcus felis strain BN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2325274..2335777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1140_RS11120 (A1140_10895) - 2325638..2326984 (-) 1347 WP_103209619.1 MFS transporter -
  A1140_RS11125 (A1140_10900) deoD 2326997..2327704 (-) 708 WP_103209617.1 purine-nucleoside phosphorylase -
  A1140_RS11130 (A1140_10905) ltrA 2328142..2329428 (-) 1287 WP_281192277.1 group II intron reverse transcriptase/maturase -
  A1140_RS11135 (A1140_10910) rpsR 2329987..2330229 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  A1140_RS11140 (A1140_10915) ssbA 2330274..2330777 (-) 504 WP_103207848.1 single-stranded DNA-binding protein Machinery gene
  A1140_RS11145 (A1140_10920) rpsF 2330801..2331097 (-) 297 WP_103207850.1 30S ribosomal protein S6 -
  A1140_RS11150 (A1140_10925) - 2331277..2331897 (-) 621 WP_349421000.1 DUF5780 domain-containing protein -
  A1140_RS11155 - 2331894..2332295 (-) 402 WP_115891102.1 hypothetical protein -
  A1140_RS11160 (A1140_10935) - 2332571..2334103 (+) 1533 WP_349421001.1 B domain-containing protein -
  A1140_RS11165 (A1140_10940) tnpA 2334336..2334755 (-) 420 WP_349421401.1 IS200/IS605 family transposase -
  A1140_RS11170 (A1140_10945) - 2335075..2335713 (+) 639 WP_349421002.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18660.30 Da        Isoelectric Point: 4.9305

>NTDB_id=174450 A1140_RS11140 WP_103207848.1 2330274..2330777(-) (ssbA) [Staphylococcus felis strain BN1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHANNPGNDFQSYEQSFGGQQQGQNSSYQNNNQSSHNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=174450 A1140_RS11140 WP_103207848.1 2330274..2330777(-) (ssbA) [Staphylococcus felis strain BN1]
ATGCTTAACAGAGTCGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTTGC
GACTTTTACCTTAGCGGTTAATCGTACGTTTACGAATGCCCAAGGGGAACGTGAAGCGGACTTCATCAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAACGTAAGTAACTTCTTATTTAAAGGAAGTCTTGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTCACAGAAGTTGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAGCGTCATGCCAATAACCCAGGAAATGATTTCCAAAGTTATGAACAAAGTTTCGGTGGACAACAACAAGGCC
AAAATTCGTCATATCAAAACAACAATCAATCATCCCATAATGATAACCCATTTGCCAATGCGAATGGACCAATCGATATT
AGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3ZHH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.677
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.868

0.377

Multiple sequence alignment