Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   B37_RS10815 Genome accession   NZ_CP014794
Coordinates   2049803..2050837 (-) Length   344 a.a.
NCBI ID   WP_080626943.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCCB 37     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2044803..2055837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B37_RS10765 (B37_02180) tasA 2044878..2045672 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  B37_RS10770 (B37_02181) sipW 2045746..2046330 (-) 585 WP_003183449.1 signal peptidase I SipW -
  B37_RS10775 (B37_02182) tapA 2046327..2047055 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  B37_RS10780 (B37_02183) - 2047332..2047652 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  B37_RS10785 (B37_02184) - 2047676..2047858 (-) 183 WP_003183456.1 YqzE family protein -
  B37_RS10790 (B37_02185) comGG 2047947..2048312 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  B37_RS10795 (B37_02186) comGF 2048325..2048813 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  B37_RS10800 comGE 2048722..2049069 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  B37_RS10805 (B37_02187) comGD 2049053..2049490 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  B37_RS10810 (B37_02188) comGC 2049496..2049789 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  B37_RS10815 (B37_02189) comGB 2049803..2050837 (-) 1035 WP_080626943.1 competence type IV pilus assembly protein ComGB Machinery gene
  B37_RS10820 (B37_02190) comGA 2050827..2051891 (-) 1065 WP_073425737.1 competence type IV pilus ATPase ComGA Machinery gene
  B37_RS10825 (B37_02191) - 2052048..2052887 (-) 840 WP_080626944.1 STAS domain-containing protein -
  B37_RS10835 (B37_02193) - 2053129..2053506 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  B37_RS10840 (B37_02194) - 2053715..2053960 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  B37_RS10845 (B37_02195) - 2053998..2054636 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  B37_RS10850 (B37_02196) - 2054792..2054965 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  B37_RS10855 (B37_02197) - 2055026..2055340 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39768.04 Da        Isoelectric Point: 9.3543

>NTDB_id=174249 B37_RS10815 WP_080626943.1 2049803..2050837(-) (comGB) [Bacillus licheniformis strain SCCB 37]
MKIKMKWPVREQADLLKKLGDMMQSGYMILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=174249 B37_RS10815 WP_080626943.1 2049803..2050837(-) (comGB) [Bacillus licheniformis strain SCCB 37]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TATGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCATAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.895

0.529

Multiple sequence alignment