Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A0O21_RS00765 Genome accession   NZ_CP014699
Coordinates   153719..154222 (+) Length   167 a.a.
NCBI ID   WP_067060085.1    Uniprot ID   A0A172Q5B4
Organism   Streptococcus pantholopis strain TA 26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148719..159222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS00740 (A0O21_00750) comE/blpR 148822..149556 (+) 735 WP_067060077.1 response regulator transcription factor Regulator
  A0O21_RS00745 (A0O21_00755) - 149560..150927 (+) 1368 WP_067060079.1 sensor histidine kinase -
  A0O21_RS00750 (A0O21_00760) - 151597..152712 (-) 1116 WP_173644624.1 alpha/beta fold hydrolase -
  A0O21_RS00755 (A0O21_00765) - 152764..153183 (-) 420 WP_067060081.1 helix-turn-helix domain-containing protein -
  A0O21_RS00760 (A0O21_00770) rpsF 153414..153704 (+) 291 WP_067060083.1 30S ribosomal protein S6 -
  A0O21_RS00765 (A0O21_00775) ssb 153719..154222 (+) 504 WP_067060085.1 single-stranded DNA-binding protein Machinery gene
  A0O21_RS00770 (A0O21_00780) rpsR 154507..154746 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  A0O21_RS00775 (A0O21_00785) - 154956..155639 (-) 684 WP_067060087.1 DUF1129 domain-containing protein -
  A0O21_RS00780 (A0O21_00790) - 155739..156683 (-) 945 WP_067060088.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18400.12 Da        Isoelectric Point: 4.9008

>NTDB_id=173335 A0O21_RS00765 WP_067060085.1 153719..154222(+) (ssb) [Streptococcus pantholopis strain TA 26]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQAGEREADFINIVIWRQAAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRAAREGANTGNYQSSGGNQSFGGSPQGSAQQPSQNQTPNFGRDESPFGNSNPLDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=173335 A0O21_RS00765 WP_067060085.1 153719..154222(+) (ssb) [Streptococcus pantholopis strain TA 26]
ATGATTAATAATGTCGTACTTGTGGGACGCATGACCCGTGACGCAGAATTACGCTACACCCCAAGCAATCAGGCTGTGGC
AACTTTTACTTTGGCAGTCAATCGCAATTTTAAAAATCAGGCCGGAGAGCGTGAAGCTGATTTCATTAACATTGTCATTT
GGCGGCAGGCCGCAGAAAATTTAGCTAATTGGGCTAAAAAGGGGACTTTGCTTGGAATTACAGGCCGAATTCAGACCCGT
AATTATGAAAATCAACAGGGTCAGCGTGTTTATGTGACGGAAGTTGTTGCTGATAACTTTCAAATATTAGAAAGCCGTGC
TGCGCGCGAAGGCGCTAATACAGGTAATTATCAGTCTTCAGGCGGGAACCAGTCTTTTGGCGGTTCACCACAAGGCAGCG
CTCAGCAGCCTTCACAGAATCAAACCCCAAATTTTGGCAGAGATGAGAGTCCTTTCGGAAATTCAAACCCCTTGGATATC
TCTGATGATGACCTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172Q5B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.623
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.618

100

0.593

Multiple sequence alignment