Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A0U95_RS20840 Genome accession   NZ_CP014693
Coordinates   4796094..4797440 (-) Length   448 a.a.
NCBI ID   WP_053163367.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain L13-6-12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4791094..4802440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U95_RS20820 (A0U95_20780) thiO 4791521..4792621 (+) 1101 WP_003205709.1 glycine oxidase ThiO -
  A0U95_RS20825 (A0U95_20785) - 4793014..4794444 (-) 1431 WP_039011935.1 IS1182 family transposase -
  A0U95_RS20830 (A0U95_20790) - 4794443..4794628 (+) 186 WP_069971379.1 hypothetical protein -
  A0U95_RS30535 - 4795013..4795201 (-) 189 WP_155252615.1 nucleoid-structuring protein H-NS -
  A0U95_RS20835 (A0U95_20795) - 4795647..4796012 (+) 366 WP_039014157.1 DUF6124 family protein -
  A0U95_RS20840 (A0U95_20800) pilR 4796094..4797440 (-) 1347 WP_053163367.1 sigma-54-dependent transcriptional regulator Regulator
  A0U95_RS20845 (A0U95_20805) pilS 4797437..4799026 (-) 1590 WP_069971380.1 two-component system sensor histidine kinase NtrB Regulator
  A0U95_RS20850 (A0U95_20810) - 4799016..4799249 (-) 234 WP_013694237.1 PP0621 family protein -
  A0U95_RS20855 (A0U95_20815) - 4799376..4800392 (-) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  A0U95_RS20860 (A0U95_20820) rluD 4800543..4801505 (+) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A0U95_RS20865 (A0U95_20825) pgeF 4801502..4802227 (+) 726 WP_069971381.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50156.56 Da        Isoelectric Point: 5.9886

>NTDB_id=173300 A0U95_RS20840 WP_053163367.1 4796094..4797440(-) (pilR) [Pseudomonas brassicacearum strain L13-6-12]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=173300 A0U95_RS20840 WP_053163367.1 4796094..4797440(-) (pilR) [Pseudomonas brassicacearum strain L13-6-12]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.107

0.781
  pilR Acinetobacter baumannii strain A118

50.327

100

0.516

Multiple sequence alignment