Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   A0U95_RS20845 Genome accession   NZ_CP014693
Coordinates   4797437..4799026 (-) Length   529 a.a.
NCBI ID   WP_069971380.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain L13-6-12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4792437..4804026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U95_RS20825 (A0U95_20785) - 4793014..4794444 (-) 1431 WP_039011935.1 IS1182 family transposase -
  A0U95_RS20830 (A0U95_20790) - 4794443..4794628 (+) 186 WP_069971379.1 hypothetical protein -
  A0U95_RS30535 - 4795013..4795201 (-) 189 WP_155252615.1 nucleoid-structuring protein H-NS -
  A0U95_RS20835 (A0U95_20795) - 4795647..4796012 (+) 366 WP_039014157.1 DUF6124 family protein -
  A0U95_RS20840 (A0U95_20800) pilR 4796094..4797440 (-) 1347 WP_053163367.1 sigma-54-dependent transcriptional regulator Regulator
  A0U95_RS20845 (A0U95_20805) pilS 4797437..4799026 (-) 1590 WP_069971380.1 two-component system sensor histidine kinase NtrB Regulator
  A0U95_RS20850 (A0U95_20810) - 4799016..4799249 (-) 234 WP_013694237.1 PP0621 family protein -
  A0U95_RS20855 (A0U95_20815) - 4799376..4800392 (-) 1017 WP_003205698.1 outer membrane protein assembly factor BamD -
  A0U95_RS20860 (A0U95_20820) rluD 4800543..4801505 (+) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A0U95_RS20865 (A0U95_20825) pgeF 4801502..4802227 (+) 726 WP_069971381.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 59006.85 Da        Isoelectric Point: 7.6220

>NTDB_id=173301 A0U95_RS20845 WP_069971380.1 4797437..4799026(-) (pilS) [Pseudomonas brassicacearum strain L13-6-12]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRRRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVTGTGLTLQPSFIALGHHDQQQLLVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QHLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMTHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=173301 A0U95_RS20845 WP_069971380.1 4797437..4799026(-) (pilS) [Pseudomonas brassicacearum strain L13-6-12]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTATCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAATGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTTGAGAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACTGACGTGCTGCTGCTCTCGTGGCTGTTCTTCGCCGCGGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCGGCAATACGCTGTTGCGACGCCGGGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACTTTTTTCCTCGGCCTCAGCGACTCAAACCGTCCCAGCAGTTATCTGCAAGCCGGCACCCTGGGG
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTAATCGGTCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCGAACGGCGCGTGCAATTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGAATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGCTGAACAACCCCAGCCTGCGCCCCCCCAGCCTGACCGTGAC
CGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATCACGATCAGCAGCAGTTGCTGGTATTCCTTGAGG
ACCTGGCCCAAGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCGTCCCTCGGGCGCCTCACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCAGCGCAATTACTGCGCGAATCCGAGGAACTGAACAACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACCCCCCAACGCCTCGACCTGCGGACCTGGCTCGATCAGTTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAGCAC
CAGCACTTGCACCTGAGCATCGACCCGGGTGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAAGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGACCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGATCCCC
ACAGCCAGCTGTCGACACTGGACATCATCGACAACGGCCCCGGTGTAACACCCGAGCAGCAGGCACATTTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.038

99.811

0.599

Multiple sequence alignment