Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   BSF20_RS17690 Genome accession   NZ_CP018152
Coordinates   3529424..3531301 (-) Length   625 a.a.
NCBI ID   WP_003154106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3524424..3536301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS17665 (BSF20_17310) - 3524772..3525746 (-) 975 WP_003154101.1 acyltransferase domain-containing protein -
  BSF20_RS17670 (BSF20_17315) fabD 3525883..3526752 (-) 870 WP_024085317.1 ACP S-malonyltransferase -
  BSF20_RS17675 (BSF20_17320) - 3527067..3527744 (-) 678 WP_003154103.1 MBL fold metallo-hydrolase -
  BSF20_RS17685 (BSF20_17325) - 3528814..3529023 (+) 210 WP_003154104.1 hypothetical protein -
  BSF20_RS17690 (BSF20_17330) hexB 3529424..3531301 (-) 1878 WP_003154106.1 DNA mismatch repair endonuclease MutL Machinery gene
  BSF20_RS17695 (BSF20_17335) hexA 3531317..3533902 (-) 2586 WP_060657369.1 DNA mismatch repair protein MutS Machinery gene
  BSF20_RS17700 (BSF20_17340) cotE 3534021..3534566 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  BSF20_RS17705 (BSF20_17345) ymcA 3534820..3535251 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70230.35 Da        Isoelectric Point: 5.7702

>NTDB_id=173293 BSF20_RS17690 WP_003154106.1 3529424..3531301(-) (hexB) [Bacillus amyloliquefaciens strain LM2303]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKTAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIEEESLPDEAGHG
VPPELGMPVTEAPVSDIPEPEEEADSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=173293 BSF20_RS17690 WP_003154106.1 3529424..3531301(-) (hexB) [Bacillus amyloliquefaciens strain LM2303]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATTGACGCAAACAGCACAGTCATTGAGATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGCAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACGCCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATTGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTGCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATCGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGCAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAAACAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGAGCCGGTCATAGAAGAAGAGTCCCTGCCGGATGAAGCGGGTCACGGA
GTGCCGCCGGAACTCGGCATGCCGGTAACGGAAGCGCCTGTTTCCGATATTCCGGAGCCCGAAGAGGAAGCTGACTCTGA
AGAAATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAA
ACGGCTTGTATATCATTGACCAGCATGCGGCGCAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTC
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCA
GCATGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAA
CTCAGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGAGAAATGACGAAATCAA
AGCGCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGTA
CGTATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.522

100

0.482