Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BSF20_RS17705 Genome accession   NZ_CP018152
Coordinates   3534820..3535251 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529820..3540251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS17695 (BSF20_17335) hexA 3531317..3533902 (-) 2586 WP_060657369.1 DNA mismatch repair protein MutS Machinery gene
  BSF20_RS17700 (BSF20_17340) cotE 3534021..3534566 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  BSF20_RS17705 (BSF20_17345) ymcA 3534820..3535251 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BSF20_RS17710 (BSF20_17350) miaB 3535254..3536783 (-) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BSF20_RS17715 (BSF20_17355) - 3536926..3538104 (-) 1179 WP_088037143.1 glycine C-acetyltransferase -
  BSF20_RS17720 (BSF20_17360) tdh 3538117..3539163 (-) 1047 WP_043867101.1 L-threonine 3-dehydrogenase -
  BSF20_RS17725 (BSF20_17365) spoVS 3539422..3539682 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=173295 BSF20_RS17705 WP_003154113.1 3534820..3535251(-) (ymcA) [Bacillus amyloliquefaciens strain LM2303]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=173295 BSF20_RS17705 WP_003154113.1 3534820..3535251(-) (ymcA) [Bacillus amyloliquefaciens strain LM2303]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment