Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSF20_RS04165 Genome accession   NZ_CP018152
Coordinates   800536..801171 (-) Length   211 a.a.
NCBI ID   WP_015388630.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 795536..806171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS04150 (BSF20_04075) abc-f 795759..797387 (+) 1629 WP_044053036.1 ribosomal protection-like ABC-F family protein -
  BSF20_RS04155 (BSF20_04080) - 797526..798248 (+) 723 WP_044053037.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BSF20_RS04160 (BSF20_04085) - 798284..800437 (-) 2154 WP_025853712.1 MMPL family transporter -
  BSF20_RS04165 (BSF20_04090) vraR 800536..801171 (-) 636 WP_015388630.1 response regulator transcription factor Regulator
  BSF20_RS04170 (BSF20_04095) - 801164..802033 (-) 870 Protein_814 sensor histidine kinase -
  BSF20_RS04175 (BSF20_04100) - 802186..802431 (+) 246 WP_072588282.1 spore gernimation protein GerQ -
  BSF20_RS04180 (BSF20_04105) - 802449..802817 (+) 369 WP_003156070.1 spore coat protein -
  BSF20_RS04185 (BSF20_04110) - 802836..803972 (+) 1137 WP_003156072.1 zinc-dependent alcohol dehydrogenase -
  BSF20_RS04190 (BSF20_04115) - 803991..804188 (+) 198 WP_015388634.1 hypothetical protein -
  BSF20_RS04195 (BSF20_04120) - 804203..804502 (+) 300 WP_003156074.1 spore coat protein -
  BSF20_RS20840 - 804604..804690 (+) 87 Protein_820 EamA/RhaT family transporter -
  BSF20_RS04200 (BSF20_04125) - 804784..805362 (-) 579 WP_003156075.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23560.28 Da        Isoelectric Point: 5.9610

>NTDB_id=173196 BSF20_RS04165 WP_015388630.1 800536..801171(-) (vraR) [Bacillus amyloliquefaciens strain LM2303]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAAELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREKKMERANANETQLTDKEIIVLQAVAK
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=173196 BSF20_RS04165 WP_015388630.1 800536..801171(-) (vraR) [Bacillus amyloliquefaciens strain LM2303]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGCGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATTATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAAAGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTTTGCAAGCCGTTGCGAAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(146-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.842

99.052

0.365

Multiple sequence alignment