Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AR327_RS20130 Genome accession   NZ_CP014643
Coordinates   4120002..4121063 (-) Length   353 a.a.
NCBI ID   WP_031419019.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain OT4b.25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4115002..4126063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR327_RS20105 (AR327_20105) - 4115033..4115749 (-) 717 WP_012293335.1 YveK family protein -
  AR327_RS20110 (AR327_20110) - 4115819..4116754 (-) 936 WP_227256913.1 O-antigen ligase family protein -
  AR327_RS20115 (AR327_20115) - 4117008..4117772 (-) 765 WP_012293333.1 tyrosine-protein phosphatase -
  AR327_RS20120 (AR327_20120) rny 4117919..4119478 (-) 1560 WP_012293332.1 ribonuclease Y -
  AR327_RS20130 (AR327_20130) recA 4120002..4121063 (-) 1062 WP_031419019.1 recombinase RecA Machinery gene
  AR327_RS20135 (AR327_20135) cinA 4121224..4122483 (-) 1260 WP_012293330.1 competence/damage-inducible protein A Machinery gene
  AR327_RS20140 (AR327_20140) pgsA 4122501..4123079 (-) 579 WP_031419015.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AR327_RS20145 (AR327_20145) - 4123127..4124056 (-) 930 WP_012293328.1 helix-turn-helix domain-containing protein -
  AR327_RS20150 (AR327_20150) - 4124073..4124858 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  AR327_RS20155 (AR327_20155) - 4125085..4125342 (-) 258 WP_008178933.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38035.14 Da        Isoelectric Point: 4.7319

>NTDB_id=172952 AR327_RS20130 WP_031419019.1 4120002..4121063(-) (recA) [Lysinibacillus sphaericus strain OT4b.25]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEDISNK
IRSSYGIAASSYTIAAHEEDEMDEELMSLLDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=172952 AR327_RS20130 WP_031419019.1 4120002..4121063(-) (recA) [Lysinibacillus sphaericus strain OT4b.25]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATTATGAAACT
CGGTGAAAAAACCGATTTAGAAATTGCCACATCTTCAAGTGGATCACTAGCACTTGACGCTGCATTAGGCGTAGGTGGTT
ATCCACGTGGACGTATTATTGAAGTGTATGGTCCTGAATCGTCAGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAAGCAAAAGGTGGACAAGCAGCATTTATTGATGCAGAACATGCATTAGACCCTATCTATGCTCAAAAATTAGGTGT
CAATATTGATGAGCTATTATTATCACAACCAGATACAGGGGAGCAAGCACTTGAAATTGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGATATTATTGTTATTGACTCCGTTGCTGCTCTAGTGCCAAAAGCTGAAATTGAAGGAGATATGGGGGATTCT
CATGTCGGCTTACAAGCCCGCTTAATGTCACAGGCATTACGTAAACTTTCAGGTTCTATTAACAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGCGAAAAGATTGGGGTAATGTTCGGAAACCCTGAAACAACACCAGGTGGACGTGCCCTTA
AATTCTACAGCTCTGTACGTTTAGAAGTTCGCCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACG
AAAATTAAAATTGTCAAAAATAAAGTAGCGCCGCCATTCCGTACAGCTGAAGTTGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGACATCGTGCAAAAAAGTGGTTCTTGGTATGCCTACGGTGATG
AGCGTCTAGGTCAAGGGCGAGAAAATGCAAAACAGTATTTAAAAGAAAACCCTGCTGTTTTGGAAGATATCTCGAACAAA
ATTCGATCCTCTTATGGTATTGCAGCTTCTTCCTATACAATTGCTGCGCATGAAGAAGACGAGATGGATGAAGAATTAAT
GTCACTTCTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

92.635

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

92.351

0.697
  recA Streptococcus mitis SK321

64.82

100

0.663
  recA Streptococcus mitis NCTC 12261

64.543

100

0.66
  recA Streptococcus pneumoniae TIGR4

65.994

98.3

0.649
  recA Streptococcus pneumoniae D39

65.994

98.3

0.649
  recA Streptococcus pneumoniae R6

65.994

98.3

0.649
  recA Streptococcus pneumoniae Rx1

65.994

98.3

0.649
  recA Streptococcus mutans UA159

65.33

98.867

0.646
  recA Streptococcus pyogenes NZ131

64.756

98.867

0.64
  recA Neisseria gonorrhoeae strain FA1090

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.484

0.62
  recA Helicobacter pylori strain NCTC11637

61.538

99.433

0.612
  recA Helicobacter pylori 26695

61.254

99.433

0.609
  recA Acinetobacter baylyi ADP1

61.494

98.584

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Glaesserella parasuis strain SC1401

60.519

98.3

0.595
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.635

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baumannii D1279779

60.411

96.601

0.584
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.652

0.581
  recA Vibrio cholerae strain A1552

64.062

90.652

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572

Multiple sequence alignment