Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AR327_RS11740 Genome accession   NZ_CP014643
Coordinates   2409229..2410920 (+) Length   563 a.a.
NCBI ID   WP_012295054.1    Uniprot ID   B1HRX1
Organism   Lysinibacillus sphaericus strain OT4b.25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2404229..2415920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR327_RS11715 (AR327_11715) xseB 2404646..2404879 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  AR327_RS11720 (AR327_11720) - 2404883..2405764 (+) 882 WP_012295058.1 polyprenyl synthetase family protein -
  AR327_RS11725 (AR327_11725) dxs 2405926..2407827 (+) 1902 WP_012295057.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AR327_RS11730 (AR327_11730) - 2407827..2408645 (+) 819 WP_012295056.1 TlyA family RNA methyltransferase -
  AR327_RS11735 (AR327_11735) ahrC 2408746..2409195 (+) 450 WP_031417410.1 transcriptional regulator AhrC/ArgR -
  AR327_RS11740 (AR327_11740) recN 2409229..2410920 (+) 1692 WP_012295054.1 DNA repair protein RecN Machinery gene
  AR327_RS11745 (AR327_11745) - 2411045..2411992 (+) 948 WP_036162057.1 SpoIVB peptidase S55 domain-containing protein -
  AR327_RS11750 (AR327_11750) spo0A 2412385..2413176 (+) 792 WP_031417414.1 sporulation transcription factor Spo0A -
  AR327_RS11755 (AR327_11755) - 2413439..2414431 (+) 993 WP_012295050.1 S-layer homology domain-containing protein -
  AR327_RS11760 (AR327_11760) - 2414514..2414699 (+) 186 WP_031417418.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63478.21 Da        Isoelectric Point: 4.6210

>NTDB_id=172945 AR327_RS11740 WP_012295054.1 2409229..2410920(+) (recN) [Lysinibacillus sphaericus strain OT4b.25]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLREIGASLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPIQ
KTYSEQYEEYRMLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDDLLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAATVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELAAELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELSYFDANGKDQIVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=172945 AR327_RS11740 WP_012295054.1 2409229..2410920(+) (recN) [Lysinibacillus sphaericus strain OT4b.25]
GTGTTAAGAGAGCTTAGTATCCGAAACTTTGCTATCATTGAGGATTTGACTGTAAGTTTTTCAGAAGGATTGACAGTGCT
AACTGGGGAAACTGGTGCTGGTAAATCAATTATCATTGATGCTGTTCATTTACTTGCTGGTGGGCGGGGAAATACTGAAT
TTATTCGTCATGGAGCAAGGAAAGCAGAATTAGGTGGTTTATTTCAAATTTCGAATTCCACGCATCCAGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATTGAAGAAGATACAGTTATTTTACGTCGTGATTTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCAGTGCTGAGGGAAATTGGTGCGAGTCTTATTGATATTCATGGCCAACATG
AAAATCAAGAGCTGATGGATGAAAAACAACATATCAATTTACTCGACCAGTTTGCAGAAGAACAGCTGTTGCCTATTCAA
AAAACATACAGCGAACAATATGAAGAATATCGAATGCTGAAAAAGGACCTGGCTTCAATTTCTATTGATGAACAATTGAT
GGCACAACGCATTGATTTGTATCAATTTCAAATAAAAGAGCTAGAAGAAGCCAATTTAAGGCTAGGTGAGGAAGATGATC
TTCTTGATGAACGCCGTCGACTCATGAATTACAATAAAATTTTTGAGCGCTCTAGTGCTGCCTATGAGGCTATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGTAATGCAATGGGAGCTTTGGACGATGCAGCAACAGTGGATGAACAATTCAAAGA
AGCTTCCGAGGCAGTGACAACGGCATTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAGTTAG
AGTTTGATCCAGCACGTTTAAATGAGGTGGAGCAACGGTTAGCTTTATTCCAAAATTTAAAACGCAAATATGGTTCGACA
GTGGAGGACATTTTAGCGTATTTTGAAAAAATAAAAATAGAGTTAAATGAACTGCTCAATCGCGATGAAATTTTGCAGGT
GAAAGAGCGAAGAGTGCTTGAAATGGAATCGGTGCTCAATGAGCTTGCTGCAGAACTTTCAACTGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGTGAATTACATATGGAAAAAGCTAAATTCATTGTCAATTTTGAA
GAATTGTCATATTTCGATGCAAATGGAAAAGATCAAATTGTTTTCTATATTTCTACCAATGTTGGAGAACCACCAAAGTC
CTTACCGAAAATTGCTTCGGGAGGAGAGTTATCACGAATGATGCTGGCGCTGAAAACCATTTTCTCTTCTTCGAATGGTA
TTACATCCATCATTTTTGATGAAGTGGACACAGGTGTTAGTGGAAGAGTAGCGCAGGCCATTGCAGAAAAAATTGCTGCA
GTATCCATTAATTCTCAAGTGCTTTGCATTTCACACTTACCTCAAGTTGCAGCAATGGCTGATCATCATTACTTTATAAA
AAAAGAAGTCGAACATGATCGAACATTTACTTCTTTATCAGAAATTGATCAGAAGGCACGGATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACAGAAATTACTGCTTTAACGCTACAGCATGCAACAGAGTTATTAACCATGGCAGAAGAACGTAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1HRX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542

Multiple sequence alignment