Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VVCECT4999_RS15980 Genome accession   NZ_CP014636
Coordinates   3238773..3239483 (+) Length   236 a.a.
NCBI ID   WP_039451359.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3233773..3244483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS15960 (VVCECT4999_14950) greB 3234051..3234533 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  VVCECT4999_RS15965 (VVCECT4999_14955) - 3234769..3237093 (+) 2325 WP_039451366.1 Tex family protein -
  VVCECT4999_RS15970 (VVCECT4999_14960) - 3237309..3237779 (-) 471 WP_011078928.1 hypothetical protein -
  VVCECT4999_RS15975 (VVCECT4999_14965) bioH 3237917..3238684 (-) 768 WP_039451363.1 pimeloyl-ACP methyl ester esterase BioH -
  VVCECT4999_RS15980 comF 3238773..3239483 (+) 711 WP_039451359.1 ComF family protein Machinery gene
  VVCECT4999_RS15985 (VVCECT4999_14975) nfuA 3239614..3240198 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  VVCECT4999_RS15990 (VVCECT4999_14980) nudE 3240314..3240868 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  VVCECT4999_RS15995 (VVCECT4999_14985) cysQ 3240883..3241710 (+) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VVCECT4999_RS16000 (VVCECT4999_14990) - 3241828..3242589 (-) 762 WP_039451357.1 type II secretion system protein N -
  VVCECT4999_RS16005 (VVCECT4999_14995) - 3242591..3243082 (-) 492 WP_038941658.1 type II secretion system protein M -
  VVCECT4999_RS16010 (VVCECT4999_15000) gspL 3243090..3244289 (-) 1200 WP_038969866.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27199.91 Da        Isoelectric Point: 9.1418

>NTDB_id=172873 VVCECT4999_RS15980 WP_039451359.1 3238773..3239483(+) (comF) [Vibrio vulnificus strain CECT 4999]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQLCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
HFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=172873 VVCECT4999_RS15980 WP_039451359.1 3238773..3239483(+) (comF) [Vibrio vulnificus strain CECT 4999]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGTCAACTTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CACTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTATTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCTCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.556

99.153

0.551
  comF Vibrio campbellii strain DS40M4

45.833

100

0.466

Multiple sequence alignment