Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AZE41_RS12450 Genome accession   NZ_CP014616
Coordinates   2622294..2623991 (-) Length   565 a.a.
NCBI ID   WP_067209878.1    Uniprot ID   A0A7G8X174
Organism   Sporosarcina psychrophila strain DSM 6497     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617294..2628991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE41_RS12435 (AZE41_12435) - 2617305..2618867 (-) 1563 WP_067209871.1 DUF342 domain-containing protein -
  AZE41_RS12440 (AZE41_12440) spo0A 2620117..2620908 (-) 792 WP_067209873.1 sporulation transcription factor Spo0A -
  AZE41_RS12445 (AZE41_12445) - 2621162..2622130 (-) 969 WP_067209875.1 SpoIVB peptidase S55 domain-containing protein -
  AZE41_RS12450 (AZE41_12450) recN 2622294..2623991 (-) 1698 WP_067209878.1 DNA repair protein RecN Machinery gene
  AZE41_RS12455 (AZE41_12455) ahrC 2624007..2624456 (-) 450 WP_067209880.1 transcriptional regulator AhrC/ArgR -
  AZE41_RS12460 (AZE41_12460) - 2624548..2625369 (-) 822 WP_067209882.1 TlyA family RNA methyltransferase -
  AZE41_RS12465 (AZE41_12465) dxs 2625366..2627267 (-) 1902 WP_067213960.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AZE41_RS12470 (AZE41_12470) - 2627364..2628248 (-) 885 WP_067209885.1 polyprenyl synthetase family protein -
  AZE41_RS12475 (AZE41_12475) - 2628241..2628483 (-) 243 WP_082786596.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63496.11 Da        Isoelectric Point: 4.7981

>NTDB_id=172702 AZE41_RS12450 WP_067209878.1 2622294..2623991(-) (recN) [Sporosarcina psychrophila strain DSM 6497]
MLREISIKNFAIIENLEITFDEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGATKAELEGLFTIEEESHPIIAQ
LAEFGIDAQDGVVILRRDLNSNGKTVCRVNGKLVTIAILREIGSQLIDIHGQHENQELMHERSHIHLLDHFAGEKLEHAY
ENYFELYESYRKLKRKLEKADDNEQQVAQRIDLYSFQLKEINAAGLVIGEEDQLEAEKQKLQNFNRLFERLNTAYVSISG
DTHALDWVGSAMSDMEDAASVDKSLKLHAETIATSFYALQDTAHELKSILDDMEFDPARLEVVEERLALHISLKRKYGKT
IEDILLYRDKITEELENLVSRDERLFAEQEKLAQLLQDLEIEAEELSIIRQNSSIQLENAIMEQLEQLHMGKASFKVEIT
RKAAGTFDSNGYDDVNFLISTNVGEPLKPLVKVASGGEISRIMLAIKTIFSKHQGVTSLIFDEVDTGVSGRVAQAIAEKI
AIIATDSQVLCISHLPQVAAMADHHYLIKKNVISDRTMTEIHDVIESDRTEELSRMLSGAETTPLTLKHAEELLKLAAER
KKSFR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=172702 AZE41_RS12450 WP_067209878.1 2622294..2623991(-) (recN) [Sporosarcina psychrophila strain DSM 6497]
TTGTTACGTGAAATCTCCATAAAAAACTTTGCAATCATTGAAAACCTTGAAATAACATTTGATGAAGGCCTAACCGTATT
AACTGGAGAAACAGGCGCGGGAAAATCTATTATTATCGATGCTGTCCAACTACTTGCGGGTGGAAGAGGATCACAGGAAT
TTATCCGTCATGGAGCAACAAAAGCCGAACTGGAAGGGCTTTTCACTATTGAAGAAGAATCGCATCCTATTATTGCACAA
TTAGCTGAATTTGGTATTGATGCACAGGATGGCGTCGTTATATTGCGGCGCGATTTGAATTCAAATGGGAAAACGGTTTG
CCGTGTCAATGGAAAGCTTGTGACGATCGCAATTTTGAGAGAAATTGGTTCACAGTTGATTGACATACATGGTCAACACG
AAAATCAGGAATTAATGCATGAAAGAAGTCATATTCATTTACTCGATCATTTTGCGGGTGAAAAACTAGAGCATGCCTAT
GAAAACTATTTCGAGCTGTATGAAAGCTATCGAAAACTGAAACGGAAGCTTGAGAAGGCAGACGATAATGAGCAACAAGT
GGCACAACGTATCGATTTGTATTCATTCCAGCTAAAAGAGATTAATGCAGCTGGACTCGTTATTGGTGAAGAGGACCAAC
TCGAAGCAGAAAAACAAAAGCTTCAAAACTTCAATCGTTTATTTGAGCGATTGAATACCGCATATGTGTCGATCAGTGGA
GATACACATGCGCTTGACTGGGTCGGTTCTGCGATGAGTGATATGGAGGATGCCGCGTCGGTCGATAAGAGCTTGAAACT
GCATGCTGAAACGATTGCAACAAGTTTCTATGCCTTACAAGATACTGCACACGAGCTCAAAAGTATACTTGATGATATGG
AATTTGATCCTGCAAGACTCGAAGTAGTTGAAGAGCGCCTAGCACTCCACATCTCCTTGAAAAGGAAGTATGGCAAAACG
ATTGAAGACATTCTTTTGTATCGTGATAAAATCACAGAGGAACTTGAAAACTTAGTAAGTAGGGATGAACGTCTTTTTGC
CGAGCAGGAAAAACTTGCGCAACTTCTCCAAGATCTTGAAATCGAAGCAGAAGAGTTATCAATTATCCGCCAAAATTCGT
CTATTCAATTAGAAAATGCAATTATGGAACAACTGGAGCAACTTCATATGGGAAAAGCTTCTTTTAAAGTGGAAATTACT
CGAAAAGCAGCAGGTACTTTCGATTCAAATGGATATGACGATGTGAACTTCTTGATCTCGACAAACGTTGGGGAACCGTT
GAAACCACTTGTAAAAGTAGCGTCGGGCGGTGAAATTTCCCGTATAATGTTAGCGATAAAGACAATATTCTCTAAACATC
AAGGAGTTACTTCACTTATTTTTGACGAAGTGGATACGGGTGTAAGCGGAAGAGTTGCACAAGCAATTGCGGAAAAAATA
GCAATAATTGCAACAGATTCTCAGGTGCTTTGTATTTCTCATTTACCGCAAGTCGCCGCAATGGCGGATCACCATTACCT
CATTAAAAAAAATGTAATAAGTGATAGGACGATGACGGAAATTCATGATGTCATCGAATCAGACAGGACTGAAGAATTGT
CCAGGATGTTGTCTGGAGCTGAAACTACGCCATTAACATTAAAGCATGCGGAAGAGTTGTTGAAATTGGCCGCAGAACGT
AAGAAATCGTTTAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8X174

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.521

100

0.515

Multiple sequence alignment