Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AZE41_RS00180 Genome accession   NZ_CP014616
Coordinates   47238..47783 (+) Length   181 a.a.
NCBI ID   WP_067204120.1    Uniprot ID   -
Organism   Sporosarcina psychrophila strain DSM 6497     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 42238..52783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE41_RS21975 yyaC 42360..43001 (-) 642 WP_082786778.1 spore protease YyaC -
  AZE41_RS00155 (AZE41_00155) - 43077..43967 (+) 891 WP_231885745.1 mechanosensitive ion channel family protein -
  AZE41_RS00160 (AZE41_00160) - 43972..44169 (+) 198 WP_067204109.1 DUF951 domain-containing protein -
  AZE41_RS00165 (AZE41_00165) ychF 44336..45436 (+) 1101 WP_067204112.1 redox-regulated ATPase YchF -
  AZE41_RS00170 (AZE41_00170) - 46161..46742 (-) 582 WP_067204115.1 DUF3267 domain-containing protein -
  AZE41_RS00175 (AZE41_00175) rpsF 46891..47178 (+) 288 WP_067204117.1 30S ribosomal protein S6 -
  AZE41_RS00180 (AZE41_00180) ssbA 47238..47783 (+) 546 WP_067204120.1 single-stranded DNA-binding protein Machinery gene
  AZE41_RS00185 (AZE41_00185) rpsR 47827..48063 (+) 237 WP_067204122.1 30S ribosomal protein S18 -
  AZE41_RS00190 (AZE41_00190) - 48150..49205 (+) 1056 WP_197485349.1 YybS family protein -
  AZE41_RS00195 (AZE41_00195) - 49218..51194 (+) 1977 WP_067204127.1 DHH family phosphoesterase -
  AZE41_RS00200 (AZE41_00200) rplI 51194..51643 (+) 450 WP_067204131.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19864.58 Da        Isoelectric Point: 4.7915

>NTDB_id=172683 AZE41_RS00180 WP_067204120.1 47238..47783(+) (ssbA) [Sporosarcina psychrophila strain DSM 6497]
MINRVVLVGRLTKDPELKYTQTGIAVTRFTLAVNRAFQSASGEREADFISCVAWRKQAENVANFLKKGSLVGVDGRIQTG
SFEGQDGKRVYTTEVVADSTQFLEPRNASGENRSGAGGGAPYQGSQQSEQPSYQNQQSNQQYKQSNQQSQQPNQQNYTRT
DDDPFSTGGGPIEVSDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=172683 AZE41_RS00180 WP_067204120.1 47238..47783(+) (ssbA) [Sporosarcina psychrophila strain DSM 6497]
ATGATTAACCGAGTTGTTTTAGTAGGGCGATTGACAAAAGATCCTGAACTCAAGTATACACAAACCGGTATCGCTGTTAC
ACGTTTTACGTTAGCAGTAAACCGAGCTTTTCAAAGCGCTTCAGGCGAACGAGAAGCTGATTTCATCAGTTGTGTTGCTT
GGAGAAAACAGGCTGAAAACGTTGCAAACTTCTTGAAAAAGGGAAGTCTTGTCGGAGTAGATGGCCGTATTCAGACGGGC
AGCTTTGAAGGACAAGATGGAAAGCGTGTTTATACTACAGAAGTTGTAGCAGACAGCACACAATTTCTCGAACCGCGCAA
TGCATCTGGCGAAAATAGATCGGGAGCTGGCGGTGGGGCACCTTACCAAGGTTCTCAACAAAGCGAACAACCGAGCTATC
AGAATCAGCAGTCAAACCAACAATACAAACAATCTAACCAGCAATCTCAACAGCCTAATCAGCAAAATTACACACGTACT
GACGATGATCCATTCTCGACAGGCGGAGGCCCGATAGAAGTATCGGACGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.011

100

0.58
  ssb Latilactobacillus sakei subsp. sakei 23K

53.039

100

0.53

Multiple sequence alignment