Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AZE34_RS01230 Genome accession   NZ_CP014567
Coordinates   262100..262972 (-) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis strain C34847     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 257530..278800 262100..262972 within 0


Gene organization within MGE regions


Location: 257530..278800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE34_RS01215 (AZE34_01210) xerC 257530..258423 (-) 894 WP_017174598.1 tyrosine recombinase XerC -
  AZE34_RS01220 (AZE34_01215) trmFO 258561..259868 (-) 1308 WP_017174597.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AZE34_RS01225 (AZE34_01220) topA 259892..261961 (-) 2070 WP_017174596.1 type I DNA topoisomerase -
  AZE34_RS01230 (AZE34_01225) dprA 262100..262972 (-) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  AZE34_RS01235 (AZE34_01230) sucD 263230..264135 (-) 906 WP_037540990.1 succinate--CoA ligase subunit alpha -
  AZE34_RS01240 (AZE34_01235) sucC 264157..265323 (-) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  AZE34_RS01245 (AZE34_01240) - 265450..266217 (-) 768 WP_017174592.1 ribonuclease HII -
  AZE34_RS01250 (AZE34_01245) ylqF 266201..267085 (-) 885 WP_017174591.1 ribosome biogenesis GTPase YlqF -
  AZE34_RS01255 (AZE34_01250) - 267341..269947 (+) 2607 WP_017174590.1 YfhO family protein -
  AZE34_RS01260 (AZE34_01255) - 269937..272561 (+) 2625 WP_017174589.1 YfhO family protein -
  AZE34_RS01265 (AZE34_01260) - 272952..273425 (+) 474 Protein_253 transposase -
  AZE34_RS01270 (AZE34_01265) rplS 273500..273850 (-) 351 WP_002448843.1 50S ribosomal protein L19 -
  AZE34_RS01275 (AZE34_01270) trmD 273955..274692 (-) 738 WP_017174587.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AZE34_RS01280 (AZE34_01275) rimM 274692..275192 (-) 501 WP_017174586.1 ribosome maturation factor RimM -
  AZE34_RS01285 (AZE34_01280) rpsP 275324..275599 (-) 276 WP_002448807.1 30S ribosomal protein S16 -
  AZE34_RS01290 (AZE34_01285) ffh 275861..277231 (-) 1371 WP_002448737.1 signal recognition particle protein -
  AZE34_RS01295 (AZE34_01290) - 277252..277584 (-) 333 WP_017174585.1 putative DNA-binding protein -
  AZE34_RS01300 (AZE34_01295) ftsY 277571..278800 (-) 1230 WP_017174584.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=172498 AZE34_RS01230 WP_019835580.1 262100..262972(-) (dprA) [Staphylococcus hominis strain C34847]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=172498 AZE34_RS01230 WP_019835580.1 262100..262972(-) (dprA) [Staphylococcus hominis strain C34847]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369

Multiple sequence alignment