Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A2U20_RS11805 Genome accession   NZ_CP018032
Coordinates   2456045..2458126 (-) Length   693 a.a.
NCBI ID   WP_021117576.1    Uniprot ID   -
Organism   Glaesserella parasuis D74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2451045..2463126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U20_RS11785 (A2U20_11600) rbsK 2451548..2452471 (+) 924 WP_035497091.1 ribokinase -
  A2U20_RS11790 (A2U20_11605) glnA 2452791..2454218 (+) 1428 WP_042906147.1 type I glutamate--ammonia ligase -
  A2U20_RS11795 (A2U20_11610) - 2454285..2455254 (-) 970 Protein_2304 transposase -
  A2U20_RS11800 (A2U20_11615) - 2455360..2455761 (-) 402 WP_021117577.1 YgiW/YdeI family stress tolerance OB fold protein -
  A2U20_RS11805 (A2U20_11620) recG 2456045..2458126 (-) 2082 WP_021117576.1 ATP-dependent DNA helicase RecG Machinery gene
  A2U20_RS11810 (A2U20_11625) - 2458239..2459444 (-) 1206 WP_075606638.1 cupin domain-containing protein -
  A2U20_RS11815 (A2U20_11630) - 2459545..2460309 (-) 765 WP_075606639.1 BPL-N domain-containing protein -
  A2U20_RS11820 (A2U20_11635) - 2460393..2460959 (+) 567 WP_044009283.1 biotin transporter BioY -
  A2U20_RS11825 (A2U20_11640) - 2461090..2461899 (-) 810 WP_044009284.1 Cof-type HAD-IIB family hydrolase -
  A2U20_RS11830 (A2U20_11645) - 2462023..2462700 (+) 678 WP_075605147.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77375.53 Da        Isoelectric Point: 9.0494

>NTDB_id=172359 A2U20_RS11805 WP_021117576.1 2456045..2458126(-) (recG) [Glaesserella parasuis D74]
MSQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLRYQTDLKQRFLATLPFQPTNAQSRVTTEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=172359 A2U20_RS11805 WP_021117576.1 2456045..2458126(-) (recG) [Glaesserella parasuis D74]
ATGAGCCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAATGTGCAAGATCTGCTGTTCCATTTGCCTATGCGCTATGAAGACCGTACTCGGATCACGCCGATTG
CGGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTGCAATTTGGTCGTCGTCCGATT
TTAAGTACCACAATTTCTGACGGCACAAGCAAAATTACCCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCAACTGGTGTAAGAGTGAAAGCCTTTGGCGAGATTAAACGTGGTCGCTTTATGGCAGAAATTCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTGGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCTGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCTTTGCAGTTGTTGCATCGACCGCCACCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGCGAGCACCCTGCACAAAAACGGCTGATTTTTGAAGAGCTGTTGGCTCATAATTTGGCGATGCAACAGGTACGA
ATGGGTGTGCAACAACATTTTGCGGAACCGCTACGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCCGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTACGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCTGCGTTAGCGGCACTGTTGGCGATTGATAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCTCACCAGTTGATTATGAC
TGCAACGCCTATTCCACGCACCTTGGCGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATCACGACGGTGGCGATTTCGGAAGATCGTCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTATTAGAAGCACAAGCGGCGGCAGCCAT
TGCAGAAGATTTGCAACGTGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAACCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACGGTGATTGAAGTCGGTGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGTTGCACCAACTGCGTGGGCGTGTTGGACG
TGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATTGCTGAAAAAGATTTGGAAATTCGTGGTCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACGCCAAACA
GCTAACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

DEAD/DEAH box helicase (DEAD)

(292-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

39.559

98.124

0.388
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374