Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AYR68_RS16600 Genome accession   NZ_CP014539
Coordinates   3486960..3487700 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain XH859     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3481960..3492700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR68_RS16580 (AYR68_16580) aroB 3482497..3483579 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AYR68_RS16585 (AYR68_16585) aroK 3483608..3484177 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AYR68_RS16590 (AYR68_16590) pilQ 3484189..3486354 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AYR68_RS16595 (AYR68_16595) pilP 3486422..3486949 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AYR68_RS16600 (AYR68_16600) pilO 3486960..3487700 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AYR68_RS16605 (AYR68_16605) pilN 3487697..3488338 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  AYR68_RS16610 (AYR68_16610) pilM 3488338..3489396 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AYR68_RS16615 (AYR68_16615) ponA 3489559..3492114 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=172270 AYR68_RS16600 WP_000076101.1 3486960..3487700(-) (pilO) [Acinetobacter baumannii strain XH859]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=172270 AYR68_RS16600 WP_000076101.1 3486960..3487700(-) (pilO) [Acinetobacter baumannii strain XH859]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment