Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BAMY_RS07955 Genome accession   NZ_CP017953
Coordinates   1547951..1549999 (+) Length   682 a.a.
NCBI ID   WP_015388243.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542951..1554999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS07925 (BAMY_07730) spoVM 1543595..1543675 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  BAMY_RS07930 (BAMY_07735) rpmB 1543753..1543941 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  BAMY_RS07935 (BAMY_07740) - 1544200..1544562 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  BAMY_RS07940 (BAMY_07745) - 1544578..1546245 (+) 1668 WP_014304994.1 DAK2 domain-containing protein -
  BAMY_RS07945 (BAMY_07750) sdaAB 1546388..1547050 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  BAMY_RS07950 (BAMY_07755) sdaAA 1547071..1547973 (+) 903 WP_003154324.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  BAMY_RS07955 (BAMY_07760) recG 1547951..1549999 (+) 2049 WP_015388243.1 ATP-dependent DNA helicase RecG Machinery gene
  BAMY_RS07960 (BAMY_07765) fapR 1550106..1550672 (+) 567 WP_003154320.1 transcription factor FapR -
  BAMY_RS07965 (BAMY_07770) plsX 1550686..1551684 (+) 999 WP_003154319.1 phosphate acyltransferase PlsX -
  BAMY_RS07970 (BAMY_07775) fabD 1551703..1552656 (+) 954 WP_003154316.1 ACP S-malonyltransferase -
  BAMY_RS07975 (BAMY_07780) fabG 1552649..1553389 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BAMY_RS07980 (BAMY_07785) acpP 1553474..1553707 (+) 234 WP_003154310.1 acyl carrier protein -
  BAMY_RS07985 (BAMY_07790) rncS 1553846..1554595 (+) 750 WP_003154303.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77835.11 Da        Isoelectric Point: 6.8208

>NTDB_id=172124 BAMY_RS07955 WP_015388243.1 1547951..1549999(+) (recG) [Bacillus amyloliquefaciens strain Y14]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLTAFTDSLPFSLTTAQARVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGHQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=172124 BAMY_RS07955 WP_015388243.1 1547951..1549999(+) (recG) [Bacillus amyloliquefaciens strain Y14]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCTGGGAAGTGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCCGATCCGCTTCCTGAAAAATTAAGAATCCGCTATAAGCTGCCTGA
TTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTATG
AGGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCTGCTGAAAAGCTCACCGCTTTCACAGACAGCCTGCCGTTTTCACTCACGACCGCACAGGCGCGCGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTCTGTCGGGGCATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTAAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TAGAATTCAAAGCGCTGAGTCTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCCACTCCGATTCCGAGAACGTTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAAGTGATGAGAGAATTCAGCGCTAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGGGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGATTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCCGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCAGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GTCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCTTAGAAGGGGAGAAATTAAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

RecG wedge domain (RecG_wedge)

(11-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)

DEAD/DEAH box helicase (DEAD)

(259-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896
  recG/mmsA Streptococcus pneumoniae R6

50.075

97.801

0.49
  recG/mmsA Streptococcus pneumoniae R36A

50.075

97.801

0.49
  recG Neisseria meningitidis strain C311

39.663

95.748

0.38