Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AZE33_RS18265 Genome accession   NZ_CP014528
Coordinates   3786325..3787143 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH858     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3781325..3792143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE33_RS18250 (AZE33_18250) pilE 3781542..3781967 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AZE33_RS18255 (AZE33_18255) pilY2 3781964..3782446 (-) 483 WP_020753490.1 type IV pilin protein Machinery gene
  AZE33_RS18260 (AZE33_18260) pilY1 3782459..3786313 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  AZE33_RS18265 (AZE33_18265) pilX 3786325..3787143 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AZE33_RS18270 (AZE33_18270) pilW 3787140..3788141 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  AZE33_RS18275 (AZE33_18275) pilV 3788142..3788702 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AZE33_RS18280 (AZE33_18280) fimU 3788696..3789169 (-) 474 WP_001214068.1 pilus assembly FimT family protein Machinery gene
  AZE33_RS18285 (AZE33_18285) ispH 3789339..3790289 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AZE33_RS18290 (AZE33_18290) gmk 3790412..3791041 (+) 630 WP_000015937.1 guanylate kinase -
  AZE33_RS18295 (AZE33_18295) rpoZ 3791114..3791392 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AZE33_RS20760 - 3791431..3791561 (+) 131 Protein_3601 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=172112 AZE33_RS18265 WP_000149374.1 3786325..3787143(-) (pilX) [Acinetobacter baumannii strain XH858]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=172112 AZE33_RS18265 WP_000149374.1 3786325..3787143(-) (pilX) [Acinetobacter baumannii strain XH858]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment