Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AYJ52_RS02765 Genome accession   NZ_CP014477
Coordinates   590560..591189 (+) Length   209 a.a.
NCBI ID   WP_017403250.1    Uniprot ID   A0A009H1G1
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585560..596189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS02750 (AYJ52_02750) - 586623..587606 (-) 984 WP_025466709.1 putative solute-binding protein -
  AYJ52_RS02755 (AYJ52_02755) - 587686..588501 (-) 816 WP_017403249.1 NAD-dependent epimerase/dehydratase family protein -
  AYJ52_RS02760 (AYJ52_02760) recG 588522..590567 (+) 2046 WP_005078352.1 ATP-dependent DNA helicase RecG -
  AYJ52_RS02765 (AYJ52_02765) comF 590560..591189 (+) 630 WP_017403250.1 ComF family protein Machinery gene
  AYJ52_RS02770 (AYJ52_02770) mutT 591191..591592 (-) 402 WP_017403251.1 NUDIX hydrolase -
  AYJ52_RS02775 (AYJ52_02775) - 591607..592188 (-) 582 WP_017403252.1 TIGR00730 family Rossman fold protein -
  AYJ52_RS02780 (AYJ52_02780) - 592347..593360 (+) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  AYJ52_RS02785 (AYJ52_02785) - 593433..593720 (-) 288 WP_005078357.1 STAS domain-containing protein -
  AYJ52_RS02790 (AYJ52_02790) - 593732..594373 (-) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AYJ52_RS02795 (AYJ52_02795) - 594400..595080 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AYJ52_RS02800 (AYJ52_02800) mlaE 595080..595856 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24442.55 Da        Isoelectric Point: 9.9490

>NTDB_id=171821 AYJ52_RS02765 WP_017403250.1 590560..591189(+) (comF) [Acinetobacter pittii strain AP_882]
MFNFLNFQHLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=171821 AYJ52_RS02765 WP_017403250.1 590560..591189(+) (comF) [Acinetobacter pittii strain AP_882]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCAATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009H1G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833

Multiple sequence alignment