Detailed information NTG0171810

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JT25_RS14555
• Genome accession: NZ_CP014476
• Coordinates: 3157523..3158863 (+)
• Length: 446 a.a.
• NCBI ID: WP_036279415.1
• Uniprot ID: A0A126T6H8
• Organism: Methylomonas denitrificans strain FJG1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3152523..3163863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JT25_RS14540 (JT25_014540)	sucD	3153761..3154636 (-)	876	WP_062328984.1	succinate--CoA ligase subunit alpha	-
JT25_RS14545 (JT25_014545)	sucC	3154633..3155802 (-)	1170	WP_036279397.1	ADP-forming succinate--CoA ligase subunit beta	-
JT25_RS14550 (JT25_014550)	-	3155982..3157526 (+)	1545	WP_082769248.1	sensor histidine kinase	-
JT25_RS14555 (JT25_014555)	pilR	3157523..3158863 (+)	1341	WP_036279415.1	sigma-54-dependent transcriptional regulator	Regulator
JT25_RS14560 (JT25_014560)	-	3158928..3159419 (-)	492	WP_036279417.1	hypothetical protein	-
JT25_RS14565 (JT25_014565)	-	3159570..3161405 (-)	1836	WP_062328987.1	GGDEF and EAL domain-containing protein	-
JT25_RS14570 (JT25_014570)	-	3161585..3162436 (+)	852	WP_062328990.1	HDOD domain-containing protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49302.14 Da
• Isoelectric Point: 5.7099

>NTDB_id=171810 JT25_RS14555 WP_036279415.1 3157523..3158863(+) (pilR) [Methylomonas denitrificans strain FJG1]
MNMPVTLVVDDEPDIRELLEITLNRMHIQTRCAANLAEAKQLLAGEVFDLCLTDMKLPDGDGLDLVDHIQLAGLQLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLAVLRQLVSHALQASLTRVSDKERRTRDILLGESALMCAIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRGDKPFIAINCGAIPPELMESEFFGHKKGSFTGAVADKQGLFQAADGGTLFLDEVAD
LPLALQVKLLRAIQEKKVRPVGEQREVAVDVRLLSATHKDLAKMVQEGSFRQDLYYRINVIELSLPPLRARPADIPQLTE
HLLLGLAKANGMALPRLTESALNALKNYYFPGNVRELENILERALALHEDCVIEADDLNLPLGMELAAVEDFDAEKMSLE
TYLEDIEKKALSAALEENRWNKTATAKYLGLSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=171810 JT25_RS14555 WP_036279415.1 3157523..3158863(+) (pilR) [Methylomonas denitrificans strain FJG1]
ATGAATATGCCCGTCACACTGGTTGTCGACGATGAACCCGACATCAGAGAACTACTCGAAATCACCCTGAACCGCATGCA
CATTCAAACCCGCTGCGCGGCCAATTTGGCCGAGGCCAAACAGCTACTGGCCGGTGAAGTGTTTGATTTGTGTCTTACCG
ATATGAAGTTGCCGGACGGCGACGGGCTGGACTTGGTCGATCATATTCAATTGGCCGGTTTGCAGTTGCCGGTGGCGGTA
ATTACCGCGCATGGCAGCATGGATATTGCGATCAAAGCCATGAAAAAGGGGGCGTTTGACTTCCTGTCCAAGCCGGTCGA
TCTGGCGGTATTACGGCAACTGGTCAGTCATGCGCTGCAAGCTTCGCTGACTCGGGTTTCCGACAAGGAGCGGCGCACCC
GCGACATCTTGCTCGGCGAGTCGGCGCTGATGTGCGCTATTCGCTCGAAGATCGACAAGGTGGCGCGCAACCAGGCGCCG
GTTTATATCAGCGGCGAATCCGGTTCGGGGAAGGAGTTGGTGGCCAGATTGATACACCAGCAAAGCCCGCGCGGCGATAA
GCCGTTTATTGCGATTAACTGCGGCGCGATTCCTCCCGAATTGATGGAAAGCGAATTCTTCGGGCATAAAAAGGGTAGTT
TCACCGGCGCGGTTGCGGACAAGCAAGGCCTGTTTCAGGCGGCTGACGGCGGCACCTTGTTCTTGGACGAAGTGGCGGAT
TTGCCTTTAGCCTTGCAAGTCAAATTATTGCGGGCGATTCAGGAGAAAAAAGTTCGTCCGGTTGGCGAGCAGCGCGAAGT
CGCCGTCGATGTGCGCTTATTGAGCGCAACGCACAAGGATTTGGCCAAAATGGTCCAGGAAGGCAGTTTCAGACAAGACT
TGTATTACCGGATCAATGTTATCGAACTGAGTTTGCCGCCGTTGCGCGCCCGGCCTGCCGATATTCCTCAACTTACCGAG
CACTTATTGCTGGGCTTGGCCAAAGCTAACGGTATGGCTTTGCCCAGGTTGACTGAGTCGGCGCTAAATGCGTTAAAGAA
TTACTATTTCCCCGGCAATGTCCGTGAACTGGAAAATATATTGGAGCGGGCGTTGGCGTTGCATGAAGATTGCGTTATCG
AAGCCGACGATCTGAATTTGCCGCTGGGCATGGAATTGGCCGCAGTCGAAGATTTCGATGCCGAGAAGATGTCGCTGGAA
ACATATCTCGAAGATATTGAGAAAAAAGCCTTAAGCGCCGCGCTGGAAGAAAATCGTTGGAACAAAACCGCTACCGCTAA
ATACTTGGGTTTAAGCTTCCGTTCGCTGCGGTATCGCTTGAAAAAGTTGGGTCTGGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

3D structure

• AlphaFold DB: A0A126T6H8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.745	100	0.655
pilR	Acinetobacter baumannii strain A118	50.324	100	0.522
luxO	Vibrio cholerae strain A1552	39.593	99.103	0.392