Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BLD35_RS04180 Genome accession   NZ_CP017865
Coordinates   791977..792525 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YF2105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 786977..797525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD35_RS04150 (BLD35_04150) ctsT 787020..787325 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  BLD35_RS04155 (BLD35_04155) proC 787322..788059 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  BLD35_RS04160 (BLD35_04160) fliW 788059..788448 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  BLD35_RS04165 (BLD35_04165) - 788612..789259 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  BLD35_RS04170 (BLD35_04170) lon 789275..791650 (+) 2376 WP_002783351.1 endopeptidase La -
  BLD35_RS04175 (BLD35_04175) rpsR 791706..791966 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  BLD35_RS04180 (BLD35_04180) ssb 791977..792525 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  BLD35_RS04185 (BLD35_04185) rpsF 792534..792911 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  BLD35_RS04190 (BLD35_04190) - 793190..794462 (+) 1273 Protein_811 MFS transporter -
  BLD35_RS04195 (BLD35_04195) - 794462..795463 (+) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  BLD35_RS09485 (BLD35_04200) - 795456..796097 (-) 642 Protein_813 DUF535 family protein -
  BLD35_RS09765 - 796061..796312 (-) 252 WP_079462603.1 hypothetical protein -
  BLD35_RS04205 (BLD35_04205) rseP 796309..797412 (-) 1104 WP_021033695.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=171802 BLD35_RS04180 WP_002777084.1 791977..792525(-) (ssb) [Campylobacter coli strain YF2105]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=171802 BLD35_RS04180 WP_002777084.1 791977..792525(-) (ssb) [Campylobacter coli strain YF2105]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379