Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AWV81_RS12795 Genome accession   NZ_CP014471
Coordinates   2371823..2372158 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2366823..2377158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS12775 (AWV81_12770) gcvT 2367415..2368503 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  AWV81_RS12780 (AWV81_12775) hepAA 2368945..2370618 (+) 1674 WP_014480248.1 SNF2-related protein -
  AWV81_RS12785 (AWV81_12780) yqhG 2370639..2371433 (+) 795 WP_014480249.1 YqhG family protein -
  AWV81_RS12790 (AWV81_12785) sinI 2371616..2371789 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  AWV81_RS12795 (AWV81_12790) sinR 2371823..2372158 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AWV81_RS12800 (AWV81_12795) tasA 2372251..2373036 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  AWV81_RS12805 (AWV81_12800) sipW 2373100..2373672 (-) 573 WP_003230181.1 signal peptidase I SipW -
  AWV81_RS12810 (AWV81_12805) tapA 2373656..2374417 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  AWV81_RS12815 (AWV81_12810) yqzG 2374689..2375015 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AWV81_RS12820 (AWV81_12815) spoIITA 2375057..2375236 (-) 180 WP_014480252.1 YqzE family protein -
  AWV81_RS12825 (AWV81_12820) comGG 2375307..2375681 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AWV81_RS12830 (AWV81_12825) comGF 2375682..2376065 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  AWV81_RS12835 (AWV81_12830) comGE 2376091..2376438 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  AWV81_RS12840 (AWV81_12835) comGD 2376422..2376853 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  AWV81_RS12845 (AWV81_12840) comGC 2376843..2377139 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=171727 AWV81_RS12795 WP_003226345.1 2371823..2372158(+) (sinR) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=171727 AWV81_RS12795 WP_003226345.1 2371823..2372158(+) (sinR) [Bacillus subtilis subsp. natto strain CGMCC 2108]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment