Detailed information NTG0171371

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BKP58_RS20250
• Genome accession: NZ_CP017763
• Coordinates: 3796476..3797081 (+)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain 29R7-12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3791476..3802081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKP58_RS20220 (BKP58_20175)	-	3791643..3791783 (-)	141	WP_004398683.1	hypothetical protein	-
BKP58_RS22815 (BKP58_20180)	-	3791790..3792341 (-)	552	WP_014480442.1	DUF5412 family protein	-
BKP58_RS22820 (BKP58_20185)	-	3792321..3792443 (+)	123	WP_003229707.1	hypothetical protein	-
BKP58_RS20230 (BKP58_20190)	yrzF	3792489..3793136 (-)	648	WP_014480441.1	phosphotransferase	-
BKP58_RS20235 (BKP58_20195)	iolG	3793374..3794399 (+)	1026	WP_014480440.1	inositol 2-dehydrogenase	-
BKP58_RS20240 (BKP58_20200)	csbX	3794470..3795777 (+)	1308	WP_014480439.1	MFS transporter	-
BKP58_RS20245 (BKP58_20205)	bofC	3795825..3796337 (+)	513	WP_014480438.1	sporulation cell-cell signaling protein BofC	-
BKP58_RS20250 (BKP58_20210)	ruvA	3796476..3797081 (+)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
BKP58_RS20255 (BKP58_20215)	ruvB	3797092..3798096 (+)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BKP58_RS20260 (BKP58_20220)	yrzS	3798089..3798289 (+)	201	WP_003222669.1	DUF2905 domain-containing protein	-
BKP58_RS20265 (BKP58_20225)	queA	3798319..3799347 (+)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BKP58_RS20270 (BKP58_20230)	tgt	3799374..3800519 (+)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
BKP58_RS20275 (BKP58_20235)	yajC	3800556..3800822 (+)	267	WP_004398708.1	preprotein translocase subunit YajC	-
BKP58_RS20280 (BKP58_20240)	-	3800879..3801268 (-)	390	WP_014477528.1	TIGR04086 family membrane protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=171371 BKP58_RS20250 WP_003229717.1 3796476..3797081(+) (ruvA) [Bacillus subtilis strain 29R7-12]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=171371 BKP58_RS20250 WP_003229717.1 3796476..3797081(+) (ruvA) [Bacillus subtilis strain 29R7-12]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408