Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   BKP58_RS03560 Genome accession   NZ_CP017763
Coordinates   621692..623638 (-) Length   648 a.a.
NCBI ID   WP_014479763.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 616692..628638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS03530 (BKP58_03535) yloU 618354..618716 (-) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  BKP58_RS03535 (BKP58_03540) rpmB 618993..619181 (+) 189 WP_003221548.1 50S ribosomal protein L28 -
  BKP58_RS03540 (BKP58_03545) spoVM 619254..619334 (-) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  BKP58_RS03545 (BKP58_03550) thiN 619406..620050 (-) 645 WP_014479765.1 thiamine diphosphokinase -
  BKP58_RS03550 (BKP58_03555) rpe 620123..620776 (-) 654 WP_003232058.1 ribulose-phosphate 3-epimerase -
  BKP58_RS03555 (BKP58_03560) rsgA 620781..621677 (-) 897 WP_014479764.1 ribosome small subunit-dependent GTPase A -
  BKP58_RS03560 (BKP58_03565) stkP 621692..623638 (-) 1947 WP_014479763.1 serine/threonine protein kinase PrkC Regulator
  BKP58_RS03565 (BKP58_03570) prpC 623632..624396 (-) 765 WP_014479762.1 protein-serine/threonine phosphatase PrpC -
  BKP58_RS03570 (BKP58_03575) rlmN 624403..625494 (-) 1092 WP_014476780.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BKP58_RS03575 (BKP58_03580) rsmB 625498..626841 (-) 1344 WP_014479761.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BKP58_RS03580 (BKP58_03585) fmt 626828..627781 (-) 954 WP_014479760.1 methionyl-tRNA formyltransferase -
  BKP58_RS03585 (BKP58_03590) def 627786..628268 (-) 483 WP_014479759.1 peptide deformylase -

Sequence


Protein


Download         Length: 648 a.a.        Molecular weight: 71894.59 Da        Isoelectric Point: 4.7871

>NTDB_id=171264 BKP58_RS03560 WP_014479763.1 621692..623638(-) (stkP) [Bacillus subtilis strain 29R7-12]
MLIGKRISGRYQILRVIGGGGMANVYLAEDIILDREVAIKILRFDYANDNEFIRRFRREAQSASSLDHPNIVSIYDLGEE
DDIYYIVMEYVEGMTLKEYITANGPLHPKEALNIMEQIVSAIAHAHQNQIVHRDIKPHNILIDHMGNIKVTDFGIATALS
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGRIPFDGESAVSIALKHLQAETPSAKRWNPSVPQS
VENIILKATAKDPFHRYETAEDMEADIKTAFDADRLNEKRFTIQEDEEMTKAIPIIKDEELAKAAGEKEAEVTTAQENKT
KKNGKRKKWPWVLLTICLVFITAGILAVTVFPSLFMPKDVKIPDVSGMEYEKAAGLLEKEGLQVDSELLEISDEKIEEGL
MVKTDPKADTTVKEGATVTLYKSTGKAKTEIGDVTGQTVDQAKKALKDQGFKHVTVNEVNDEKNAGTVIDQNPSAGTELV
PSEDQVKLTVSIGPEDITLRDLKTYSKEAASGYLEDNGLKLVEKEAYSDDVPEGQVVKQKPAAGTAVKPGNEVEVTFSLG
PEKKPAKTVKEKVKIPYEPENEGDELQVQIAVDDADHSISDTYEEFKIKEPTERTIELKIEPGQKGYYQVMVNNKVVSYK
TIEYPKDE

Nucleotide


Download         Length: 1947 bp        

>NTDB_id=171264 BKP58_RS03560 WP_014479763.1 621692..623638(-) (stkP) [Bacillus subtilis strain 29R7-12]
GTGCTAATCGGCAAGCGGATCAGCGGGCGTTACCAAATTCTCCGCGTTATAGGCGGCGGGGGAATGGCCAACGTGTATTT
AGCTGAGGATATCATTCTAGACCGTGAAGTCGCAATTAAAATCCTGCGGTTTGACTATGCAAATGACAATGAATTTATCA
GACGTTTCCGCAGAGAAGCCCAATCCGCATCAAGCCTCGATCACCCGAATATTGTCAGCATTTACGATTTGGGCGAGGAA
GATGATATTTATTATATTGTCATGGAATACGTTGAAGGCATGACGCTTAAAGAATACATAACAGCAAATGGGCCACTTCA
CCCTAAAGAAGCGCTGAACATCATGGAGCAAATAGTCTCAGCCATCGCTCATGCCCATCAAAACCAGATTGTTCACAGAG
ACATCAAGCCGCATAACATTTTGATTGATCATATGGGAAATATCAAAGTAACGGATTTTGGAATTGCGACGGCACTAAGT
TCGACCACAATCACCCATACCAATTCAGTTCTGGGCTCGGTCCATTACTTATCACCTGAACAGGCCCGGGGCGGCTTAGC
CACAAAGAAATCGGATATTTATGCGCTTGGAATCGTTCTATTTGAGCTTTTAACCGGCCGTATTCCGTTTGATGGAGAGT
CAGCAGTCAGCATCGCCTTGAAGCATCTTCAAGCGGAAACTCCTTCGGCAAAAAGGTGGAATCCATCGGTCCCCCAAAGC
GTTGAAAACATCATACTCAAGGCAACTGCCAAAGATCCTTTTCATCGCTACGAAACGGCTGAAGACATGGAAGCAGACAT
AAAAACAGCTTTTGATGCCGACAGACTCAATGAAAAGAGATTTACGATTCAAGAAGATGAAGAAATGACAAAAGCGATAC
CTATCATTAAAGATGAAGAACTCGCTAAAGCTGCTGGCGAAAAAGAAGCTGAAGTGACAACCGCACAAGAAAACAAAACA
AAGAAGAACGGTAAAAGAAAAAAGTGGCCGTGGGTTTTGCTCACGATATGCCTCGTTTTTATCACAGCTGGAATTCTTGC
TGTCACTGTTTTTCCGTCGCTTTTCATGCCTAAGGATGTCAAAATACCTGATGTCTCCGGAATGGAATACGAAAAAGCCG
CAGGGCTCTTGGAAAAAGAAGGTTTACAGGTTGATTCCGAGTTGTTGGAAATCTCAGATGAAAAAATTGAAGAGGGCCTG
ATGGTAAAAACGGATCCTAAAGCGGATACCACAGTCAAAGAAGGCGCCACGGTCACCCTTTATAAGAGCACCGGAAAAGC
AAAAACGGAGATCGGTGATGTGACAGGCCAAACGGTCGACCAGGCAAAAAAAGCGTTGAAGGACCAAGGGTTTAAACATG
TAACAGTAAATGAAGTGAATGACGAGAAAAATGCGGGCACTGTCATTGACCAAAATCCTTCAGCAGGGACTGAGCTTGTC
CCGAGTGAAGATCAAGTCAAACTTACAGTCAGTATCGGACCCGAAGACATTACGCTTAGAGACTTGAAAACCTATAGTAA
AGAAGCAGCGTCTGGATATCTGGAAGACAACGGATTGAAGCTTGTAGAAAAAGAAGCATACTCAGATGATGTTCCAGAAG
GACAGGTTGTCAAACAAAAACCAGCAGCAGGTACGGCAGTAAAGCCGGGAAACGAAGTTGAAGTGACATTCTCTCTCGGA
CCAGAGAAAAAACCTGCGAAAACAGTGAAAGAAAAGGTCAAGATCCCCTACGAACCAGAAAATGAAGGGGACGAGCTTCA
AGTGCAAATCGCGGTTGACGATGCGGATCACAGCATCTCTGACACTTACGAAGAATTTAAGATAAAAGAGCCGACTGAAC
GAACGATCGAACTAAAGATTGAACCCGGCCAAAAAGGGTACTATCAAGTAATGGTAAACAATAAAGTTGTCAGCTACAAA
ACCATTGAGTATCCGAAAGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

40.517

89.506

0.363

  stkP Streptococcus pneumoniae D39

40.345

89.506

0.361

  stkP Streptococcus pneumoniae R6

40.345

89.506

0.361


Multiple sequence alignment