Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BKP58_RS03510 Genome accession   NZ_CP017763
Coordinates   612922..614970 (-) Length   682 a.a.
NCBI ID   WP_014479767.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607922..619970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS03480 (BKP58_03485) rncS 608321..609070 (-) 750 WP_003232030.1 ribonuclease III -
  BKP58_RS03485 (BKP58_03490) acpP 609210..609443 (-) 234 WP_003154310.1 acyl carrier protein -
  BKP58_RS03490 (BKP58_03495) fabG 609527..610267 (-) 741 WP_014476789.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BKP58_RS03495 (BKP58_03500) fabD 610260..611213 (-) 954 WP_014479769.1 ACP S-malonyltransferase -
  BKP58_RS03500 (BKP58_03505) plsX 611232..612233 (-) 1002 WP_014479768.1 phosphate acyltransferase PlsX -
  BKP58_RS03505 (BKP58_03510) fapR 612247..612813 (-) 567 WP_003232044.1 transcription factor FapR -
  BKP58_RS03510 (BKP58_03515) recG 612922..614970 (-) 2049 WP_014479767.1 ATP-dependent DNA helicase RecG Machinery gene
  BKP58_RS03515 (BKP58_03520) sdaAA 614948..615850 (-) 903 WP_003232049.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  BKP58_RS03520 (BKP58_03525) sdaAB 615876..616538 (-) 663 WP_014479766.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  BKP58_RS03525 (BKP58_03530) fakA 616677..618338 (-) 1662 WP_003232052.1 DAK2 domain-containing protein -
  BKP58_RS03530 (BKP58_03535) yloU 618354..618716 (-) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  BKP58_RS03535 (BKP58_03540) rpmB 618993..619181 (+) 189 WP_003221548.1 50S ribosomal protein L28 -
  BKP58_RS03540 (BKP58_03545) spoVM 619254..619334 (-) 81 WP_003221545.1 stage V sporulation protein SpoVM -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78163.72 Da        Isoelectric Point: 7.2740

>NTDB_id=171263 BKP58_RS03510 WP_014479767.1 612922..614970(-) (recG) [Bacillus subtilis strain 29R7-12]
MKQHQQTSIANIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKQLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=171263 BKP58_RS03510 WP_014479767.1 612922..614970(-) (recG) [Bacillus subtilis strain 29R7-12]
GTGAAACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTACACGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTTGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGCAGCTTTC
GCTCGGCTCTGTGGTGACGGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGCATTGAACCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGGTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAAGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAGCGT
TTTTCAAACGAAGAACTCATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAACCGTCTTCTTCAAGGGGACGTTGGATCAGGAAAAACGGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACGTTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATCGATGAGATGCCGGCTGGACGAAAGAGAATCGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATATTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACAATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGGAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)

DEAD/DEAH box helicase (DEAD)

(260-415)

RecG wedge domain (RecG_wedge)

(9-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.707

100

0.997
  recG/mmsA Streptococcus pneumoniae R6

48.82

99.413

0.485
  recG/mmsA Streptococcus pneumoniae R36A

48.82

99.413

0.485
  recG Neisseria meningitidis strain C311

39.695

96.041

0.381

Multiple sequence alignment