Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   AB478_RS09000 Genome accession   NZ_CP017679
Coordinates   1799822..1800811 (-) Length   329 a.a.
NCBI ID   WP_000219071.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007883     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794822..1805811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS08985 (AB478_08775) acsA 1796023..1797729 (-) 1707 WP_000862098.1 acetate--CoA ligase -
  AB478_RS08990 (AB478_08780) - 1797898..1798530 (+) 633 WP_001016006.1 GNAT family N-acetyltransferase -
  AB478_RS08995 (AB478_08785) - 1798555..1799724 (+) 1170 WP_001184008.1 acetoin utilization protein AcuC -
  AB478_RS09000 (AB478_08790) ccpA 1799822..1800811 (-) 990 WP_000219071.1 catabolite control protein A Regulator
  AB478_RS09005 (AB478_08795) - 1800884..1800997 (-) 114 WP_001788994.1 hypothetical protein -
  AB478_RS09010 (AB478_08800) - 1801351..1802442 (-) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  AB478_RS09015 (AB478_08805) - 1802899..1802982 (-) 84 WP_031845115.1 hypothetical protein -
  AB478_RS09020 (AB478_08810) - 1803138..1804337 (-) 1200 WP_000193964.1 hypothetical protein -
  AB478_RS09025 (AB478_08815) - 1804411..1804902 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35992.16 Da        Isoelectric Point: 5.7655

>NTDB_id=170868 AB478_RS09000 WP_000219071.1 1799822..1800811(-) (ccpA) [Staphylococcus aureus strain CFSAN007883]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDSEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=170868 AB478_RS09000 WP_000219071.1 1799822..1800811(-) (ccpA) [Staphylococcus aureus strain CFSAN007883]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATACCACTCAATTATTTCAAATTCAGATAACGATTCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGTCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCCAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCGAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462