Detailed information NTG0170663

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AYM39_RS18045
• Genome accession: NZ_CP014360
• Coordinates: 4046427..4047767 (-)
• Length: 446 a.a.
• NCBI ID: WP_054763602.1
• Uniprot ID: A0A172UC47
• Organism: Methylomonas sp. DH-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4041427..4052767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYM39_RS18030 (AYM39_18025)	-	4042874..4043725 (-)	852	WP_054762725.1	HDOD domain-containing protein	-
AYM39_RS18035 (AYM39_18030)	-	4043906..4045741 (+)	1836	WP_064022751.1	EAL domain-containing protein	-
AYM39_RS24005 (AYM39_18035)	-	4045893..4046381 (+)	489	WP_064022752.1	hypothetical protein	-
AYM39_RS18045 (AYM39_18040)	pilR	4046427..4047767 (-)	1341	WP_054763602.1	sigma-54 dependent transcriptional regulator	Regulator
AYM39_RS18050 (AYM39_18045)	-	4047764..4049305 (-)	1542	WP_082881000.1	ATP-binding protein	-
AYM39_RS18055 (AYM39_18050)	sucC	4049485..4050654 (+)	1170	WP_064022754.1	ADP-forming succinate--CoA ligase subunit beta	-
AYM39_RS18060 (AYM39_18055)	sucD	4050654..4051526 (+)	873	WP_064022755.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49534.08 Da
• Isoelectric Point: 6.2593

>NTDB_id=170663 AYM39_RS18045 WP_054763602.1 4046427..4047767(-) (pilR) [Methylomonas sp. DH-1]
MNMPVTLVVDDEPDIRELLEITLNRMQIQTRSAATLAEAKHCLANQSFDLCLTDMRLPDGDGLELVDYIQAQGLTLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLAVLRQLVSHALQISLNRVAEKERRTRDLLLGESAPMRNIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRSEKAFIAINCGAIPHELMESEFFGHKKGSFTGAVSDKQGLFQAADGGTLFLDEVAD
LPLALQVKLLRAIQEKKIRPIGEQREIPVDVRLLSATHRDLAKMVQEGSFRQDLYYRINVIELNLPPLRARAADIPQLTE
HLLQGLARANGIAIPRLSDAALNALKQYYFPGNVRELENILERALALHEGGVIEVDDLNLPTGLDLAAAEDFDAEKMSLE
SYLEDIEKKALSSALEENRWNKTATAKYLGMSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=170663 AYM39_RS18045 WP_054763602.1 4046427..4047767(-) (pilR) [Methylomonas sp. DH-1]
ATGAATATGCCTGTTACGTTAGTGGTCGACGACGAACCCGATATTCGGGAACTGTTGGAAATCACGTTAAACCGGATGCA
GATCCAGACCCGTAGCGCGGCTACGTTAGCCGAAGCCAAGCACTGTCTGGCTAACCAATCCTTCGATTTATGCTTGACCG
ACATGCGCTTGCCGGACGGAGACGGCTTGGAACTGGTCGATTACATCCAGGCCCAAGGTTTGACACTGCCGGTGGCGGTA
ATCACCGCCCATGGCAGCATGGATATCGCGATCAAGGCCATGAAAAAAGGCGCGTTCGATTTTCTGTCCAAGCCGGTCGA
TCTGGCGGTGTTAAGGCAATTGGTCAGCCATGCCTTGCAGATCTCGCTGAACCGGGTGGCCGAAAAGGAACGCCGCACCC
GCGATTTGTTGCTCGGGGAATCGGCGCCGATGCGCAATATCCGCTCCAAGATCGATAAAGTGGCGCGCAACCAGGCGCCG
GTTTACATCAGCGGCGAGTCGGGTTCCGGCAAGGAATTGGTGGCGCGGCTGATCCACCAGCAAAGCCCGCGCAGCGAAAA
GGCTTTTATCGCCATCAATTGCGGCGCGATTCCGCACGAATTGATGGAAAGCGAATTTTTCGGCCACAAAAAAGGCAGCT
TCACCGGGGCGGTCAGCGATAAGCAAGGTTTGTTTCAAGCCGCGGACGGCGGCACGCTGTTTCTGGACGAAGTGGCAGAT
TTGCCGTTGGCTTTGCAAGTCAAATTGCTGCGGGCGATACAGGAAAAGAAAATCCGTCCGATCGGCGAGCAGCGCGAAAT
TCCGGTGGACGTGCGTTTGCTGAGCGCAACCCACAGGGATTTGGCCAAAATGGTTCAGGAAGGCAGTTTTCGGCAGGACT
TGTATTACCGGATCAACGTCATCGAATTGAATCTGCCGCCATTACGGGCGCGAGCCGCCGATATTCCGCAATTGACCGAA
CATCTGCTGCAAGGTTTGGCGCGGGCCAACGGTATTGCTATCCCGCGCCTGTCGGATGCGGCGTTGAATGCGCTGAAACA
GTATTATTTTCCGGGCAACGTCCGCGAGTTGGAAAATATTTTGGAGCGGGCTTTGGCGCTGCACGAGGGCGGCGTGATCG
AGGTCGACGATTTGAATTTGCCGACGGGTTTGGACTTGGCCGCGGCGGAAGATTTCGATGCCGAAAAAATGTCGCTGGAA
AGTTATCTGGAAGATATCGAGAAAAAAGCGCTGAGTTCGGCTTTGGAGGAAAACCGCTGGAATAAAACCGCGACGGCTAA
ATATTTGGGCATGAGTTTCCGCTCGTTGCGTTACCGGTTGAAGAAACTCGGTCTGGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: A0A172UC47

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.333	100	0.639
pilR	Acinetobacter baumannii strain A118	50.644	100	0.529
luxO	Vibrio cholerae strain A1552	39.189	99.552	0.39