Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BKM67_RS11185 Genome accession   NZ_CP017667
Coordinates   2034039..2034500 (-) Length   153 a.a.
NCBI ID   WP_330848153.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2029039..2039500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS09885 (BKM67_09650) - 2029982..2030614 (-) 633 WP_105119744.1 thiamine diphosphokinase -
  BKM67_RS09890 (BKM67_09655) rpe 2030607..2031266 (-) 660 WP_009910898.1 ribulose-phosphate 3-epimerase -
  BKM67_RS09895 (BKM67_09660) rsgA 2031281..2032156 (-) 876 WP_105119745.1 ribosome small subunit-dependent GTPase A -
  BKM67_RS09905 (BKM67_09670) - 2032413..2034005 (-) 1593 WP_105183619.1 ABC transporter ATP-binding protein -
  BKM67_RS11185 comA 2034039..2034500 (-) 462 WP_330848153.1 ATP-binding cassette domain-containing protein Regulator
  BKM67_RS09910 (BKM67_09675) - 2034510..2035616 (-) 1107 WP_330848152.1 ABC transporter ATP-binding protein -
  BKM67_RS09915 (BKM67_09680) - 2035720..2036586 (-) 867 WP_105183620.1 Rgg/GadR/MutR family transcriptional regulator -
  BKM67_RS09920 (BKM67_09685) - 2036712..2039156 (-) 2445 WP_105183621.1 alkaline phosphatase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17404.67 Da        Isoelectric Point: 4.1967

>NTDB_id=170482 BKM67_RS11185 WP_330848153.1 2034039..2034500(-) (comA) [Streptococcus suis strain 1081]
MYFDKTSLSDLSYQAIQDKIAYLPQEGALFHDTVLYNLTMGQIVSEDRLMFLVKTMNLDSRFPSYASLSEEISDDSGLSG
GQKQRLLLIRALLQDKDILLLDESLSALDQETYAVIEDYLTSLADKTLIHISHRVSDEVLFRYDGVVRIEESN

Nucleotide


Download         Length: 462 bp        

>NTDB_id=170482 BKM67_RS11185 WP_330848153.1 2034039..2034500(-) (comA) [Streptococcus suis strain 1081]
ATTTACTTTGATAAAACCTCTCTTTCAGACTTGTCCTACCAAGCCATTCAAGACAAGATTGCCTATCTGCCACAAGAGGG
AGCCCTTTTCCATGATACGGTTCTCTACAACTTGACCATGGGACAGATTGTTTCAGAAGATAGGCTGATGTTTCTCGTTA
AGACCATGAACCTTGACAGTCGTTTCCCAAGTTATGCTTCTTTGAGCGAGGAAATTAGTGATGATAGCGGACTGTCTGGC
GGACAAAAGCAACGCCTGCTCTTGATTCGTGCCTTGCTACAAGATAAGGACATCTTGTTGCTGGATGAAAGTCTGTCTGC
CTTGGATCAGGAAACCTATGCAGTGATTGAAGATTACCTCACCTCACTAGCTGATAAGACGCTCATTCATATTTCCCACC
GTGTGTCCGATGAGGTCCTTTTTCGTTATGATGGGGTGGTACGGATTGAGGAGAGCAATTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

41.912

88.889

0.373
  comA Streptococcus pneumoniae Rx1

41.176

88.889

0.366
  comA Streptococcus pneumoniae D39

41.176

88.889

0.366
  comA Streptococcus pneumoniae R6

41.176

88.889

0.366
  comA Streptococcus mitis NCTC 12261

41.176

88.889

0.366

Multiple sequence alignment