Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BKM66_RS10565 Genome accession   NZ_CP017666
Coordinates   1944363..1944824 (-) Length   153 a.a.
NCBI ID   WP_330848153.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939363..1949824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS09350 (BKM66_09110) - 1940306..1940938 (-) 633 WP_105119744.1 thiamine diphosphokinase -
  BKM66_RS09355 (BKM66_09115) rpe 1940931..1941590 (-) 660 WP_009910898.1 ribulose-phosphate 3-epimerase -
  BKM66_RS09360 (BKM66_09120) rsgA 1941605..1942480 (-) 876 WP_105119745.1 ribosome small subunit-dependent GTPase A -
  BKM66_RS09370 (BKM66_09130) - 1942737..1944329 (-) 1593 WP_105183619.1 ABC transporter ATP-binding protein -
  BKM66_RS10565 comA 1944363..1944824 (-) 462 WP_330848153.1 ATP-binding cassette domain-containing protein Regulator
  BKM66_RS09375 (BKM66_09135) - 1944834..1945940 (-) 1107 WP_330848152.1 ABC transporter ATP-binding protein -
  BKM66_RS09380 (BKM66_09140) - 1946044..1946910 (-) 867 WP_105183620.1 Rgg/GadR/MutR family transcriptional regulator -
  BKM66_RS09385 (BKM66_09145) - 1947036..1949480 (-) 2445 WP_105183621.1 alkaline phosphatase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17404.67 Da        Isoelectric Point: 4.1967

>NTDB_id=170385 BKM66_RS10565 WP_330848153.1 1944363..1944824(-) (comA) [Streptococcus suis strain 0061]
MYFDKTSLSDLSYQAIQDKIAYLPQEGALFHDTVLYNLTMGQIVSEDRLMFLVKTMNLDSRFPSYASLSEEISDDSGLSG
GQKQRLLLIRALLQDKDILLLDESLSALDQETYAVIEDYLTSLADKTLIHISHRVSDEVLFRYDGVVRIEESN

Nucleotide


Download         Length: 462 bp        

>NTDB_id=170385 BKM66_RS10565 WP_330848153.1 1944363..1944824(-) (comA) [Streptococcus suis strain 0061]
ATTTACTTTGATAAAACCTCTCTTTCAGACTTGTCCTACCAAGCCATTCAAGACAAGATTGCCTATCTGCCACAAGAGGG
AGCCCTTTTCCATGATACGGTTCTCTACAACTTGACCATGGGACAGATTGTTTCAGAAGATAGGCTGATGTTTCTCGTTA
AGACCATGAACCTTGACAGTCGTTTCCCAAGTTATGCTTCTTTGAGCGAGGAAATTAGTGATGATAGCGGACTGTCTGGC
GGACAAAAGCAACGCCTGCTCTTGATTCGTGCCTTGCTACAAGATAAGGACATCTTGTTGCTGGATGAAAGTCTGTCTGC
CTTGGATCAGGAAACCTATGCAGTGATTGAAGATTACCTCACCTCACTAGCTGATAAGACGCTCATTCATATTTCCCACC
GTGTGTCCGATGAGGTCCTTTTTCGTTATGATGGGGTGGTACGGATTGAGGAGAGCAATTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

41.912

88.889

0.373
  comA Streptococcus pneumoniae Rx1

41.176

88.889

0.366
  comA Streptococcus pneumoniae D39

41.176

88.889

0.366
  comA Streptococcus pneumoniae R6

41.176

88.889

0.366
  comA Streptococcus mitis NCTC 12261

41.176

88.889

0.366

Multiple sequence alignment