Detailed information NTG0170327

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AVL55_RS15165
• Genome accession: NZ_CP014323
• Coordinates: 3421182..3422075 (+)
• Length: 297 a.a.
• NCBI ID: WP_061095700.1
• Uniprot ID: A0A126Q2I2
• Organism: Alteromonas macleodii strain D7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3416182..3427075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVL55_RS15140 (AVL55_15140)	ampD	3416708..3417247 (-)	540	WP_061095695.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AVL55_RS15145 (AVL55_15145)	-	3417431..3417949 (+)	519	WP_061095696.1	retropepsin-like aspartic protease family protein	-
AVL55_RS15150 (AVL55_15150)	nadC	3417982..3418836 (+)	855	WP_061095697.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AVL55_RS15155 (AVL55_15155)	-	3419407..3419844 (+)	438	WP_061095698.1	pilin	-
AVL55_RS15160 (AVL55_15160)	pilC	3419921..3421129 (+)	1209	WP_061095699.1	type II secretion system F family protein	Machinery gene
AVL55_RS15165 (AVL55_15165)	pilD	3421182..3422075 (+)	894	WP_061095700.1	prepilin peptidase	Machinery gene
AVL55_RS15170 (AVL55_15170)	coaE	3422094..3422705 (+)	612	WP_061095701.1	dephospho-CoA kinase	-
AVL55_RS15175 (AVL55_15175)	zapD	3422949..3423701 (+)	753	WP_061095702.1	cell division protein ZapD	-
AVL55_RS15180 (AVL55_15180)	yacG	3423835..3424062 (+)	228	WP_014980027.1	DNA gyrase inhibitor YacG	-
AVL55_RS15185 (AVL55_15185)	-	3424282..3425154 (+)	873	WP_061095703.1	aspartoacylase	-
AVL55_RS15190 (AVL55_15190)	mutT	3425274..3425657 (-)	384	WP_061095704.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32803.83 Da
• Isoelectric Point: 7.0536

>NTDB_id=170327 AVL55_RS15165 WP_061095700.1 3421182..3422075(+) (pilD) [Alteromonas macleodii strain D7]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGAPTPNDKNSSASEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=170327 AVL55_RS15165 WP_061095700.1 3421182..3422075(+) (pilD) [Alteromonas macleodii strain D7]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGCGCCGACACCCAACGATAAAAACTCATCAGCGTCAGAGGAAGTATTTAATCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAAATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAGTGCAAAGTTGGAATATCAGTTCGTTACCCGCTGGTTGAATTATTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTAGGGTTACTGTTAAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGCATGGGCTATGGCGATTTCAAGCTGCTCGCCGCGCTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGCAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCCGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

3D structure

• AlphaFold DB: A0A126Q2I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.737	95.96	0.525
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.179	93.939	0.471
pilD	Acinetobacter nosocomialis M2	49.821	93.939	0.468
pilD	Neisseria gonorrhoeae MS11	47.191	89.899	0.424