Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BKM66_RS02610 Genome accession   NZ_CP017666
Coordinates   524326..524970 (+) Length   214 a.a.
NCBI ID   WP_024385031.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 519326..529970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS02600 (BKM66_02560) - 521264..522673 (+) 1410 WP_105183695.1 LPXTG cell wall anchor domain-containing protein -
  BKM66_RS02605 (BKM66_02565) - 523455..524162 (-) 708 WP_029694000.1 CPBP family intramembrane glutamic endopeptidase -
  BKM66_RS02610 (BKM66_02570) scnR 524326..524970 (+) 645 WP_024385031.1 response regulator transcription factor Regulator
  BKM66_RS02615 (BKM66_02575) - 524973..526331 (+) 1359 WP_105183694.1 HAMP domain-containing sensor histidine kinase -
  BKM66_RS02620 (BKM66_02580) - 526626..527171 (+) 546 WP_024385029.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24564.67 Da        Isoelectric Point: 4.8919

>NTDB_id=170325 BKM66_RS02610 WP_024385031.1 524326..524970(+) (scnR) [Streptococcus suis strain 0061]
MAKIMVVEDDIVISQVVCEFLKDHGYEVTHISDGKIALETFREESFDLIVLDIMIPSMTGLEVLQEIRKTSKIPILMLTA
MDDEYTQLVSFNQLISDYVVKPFSPIILVKRIENILRGEGDIIEAADIQIHPSSGAVYMAEEEVQLTKKEYEILLYLAKR
RGKIVNRDHLMLGIWGYTELDSRVLDNHIKNLRKKLPSLPLRTVIGRGYQVEEF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=170325 BKM66_RS02610 WP_024385031.1 524326..524970(+) (scnR) [Streptococcus suis strain 0061]
ATGGCGAAAATTATGGTTGTAGAAGATGATATTGTTATCAGTCAAGTAGTTTGTGAATTTCTAAAGGATCACGGCTACGA
AGTGACCCATATTTCCGACGGAAAAATTGCACTTGAAACATTTCGAGAAGAATCATTTGATTTGATTGTATTGGACATTA
TGATTCCGTCCATGACAGGATTGGAAGTCCTACAGGAGATTCGTAAGACATCAAAAATTCCAATTCTTATGTTAACGGCA
ATGGATGACGAATACACACAATTGGTTAGTTTCAATCAACTGATTAGTGACTACGTTGTAAAACCTTTTTCGCCGATTAT
TCTTGTGAAACGCATTGAAAATATTTTGCGTGGTGAAGGTGATATTATAGAAGCAGCCGACATCCAAATCCATCCGTCCA
GTGGAGCGGTTTATATGGCAGAAGAAGAAGTACAATTAACGAAAAAAGAATACGAGATTTTACTGTACTTGGCAAAACGA
CGTGGAAAAATTGTCAATCGTGATCATCTAATGCTGGGAATTTGGGGCTATACAGAACTGGATAGCCGAGTTTTGGACAA
TCATATCAAGAATCTACGTAAGAAGTTACCATCTCTTCCTTTACGAACGGTAATTGGTCGAGGTTATCAGGTTGAGGAAT
TCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(142-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.739

100

0.402
  micA Streptococcus pneumoniae Cp1015

37.281

100

0.397
  vicR Streptococcus mutans UA159

35.47

100

0.388