Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | AXG94_RS11060 | Genome accession | NZ_CP014262 |
| Coordinates | 2601148..2602491 (+) | Length | 447 a.a. |
| NCBI ID | WP_053192135.1 | Uniprot ID | A0A8B6UNL8 |
| Organism | Pseudomonas corrugata strain RM1-1-4 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2596148..2607491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXG94_RS11040 (AXG94_11030) | pgeF | 2596362..2597087 (-) | 726 | WP_055135755.1 | peptidoglycan editing factor PgeF | - |
| AXG94_RS11045 (AXG94_11035) | rluD | 2597084..2598046 (-) | 963 | WP_024780729.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| AXG94_RS11050 (AXG94_11040) | - | 2598197..2599213 (+) | 1017 | WP_055135756.1 | outer membrane protein assembly factor BamD | - |
| AXG94_RS27830 | - | 2599339..2599572 (+) | 234 | WP_080686285.1 | PP0621 family protein | - |
| AXG94_RS11055 (AXG94_11045) | pilS | 2599562..2601151 (+) | 1590 | WP_024780731.1 | two-component system sensor histidine kinase NtrB | Regulator |
| AXG94_RS11060 (AXG94_11050) | pilR | 2601148..2602491 (+) | 1344 | WP_053192135.1 | sigma-54-dependent transcriptional regulator | Regulator |
| AXG94_RS11065 (AXG94_11055) | - | 2602684..2603049 (-) | 366 | WP_055135757.1 | DUF6124 family protein | - |
| AXG94_RS11070 (AXG94_11060) | thiO | 2603681..2604781 (-) | 1101 | WP_024781125.1 | glycine oxidase ThiO | - |
| AXG94_RS11075 (AXG94_11065) | - | 2604838..2605239 (-) | 402 | WP_024781124.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 447 a.a. Molecular weight: 50207.54 Da Isoelectric Point: 6.1405
>NTDB_id=169935 AXG94_RS11060 WP_053192135.1 2601148..2602491(+) (pilR) [Pseudomonas corrugata strain RM1-1-4]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEARSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPATVPTTIDRCLLGDSPPMRGVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPSLRERREDIEPLAN
HMLQRLATSTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAESNGITDTTNPELMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEARSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPATVPTTIDRCLLGDSPPMRGVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPSLRERREDIEPLAN
HMLQRLATSTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAESNGITDTTNPELMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1344 bp
>NTDB_id=169935 AXG94_RS11060 WP_053192135.1 2601148..2602491(+) (pilR) [Pseudomonas corrugata strain RM1-1-4]
TTGAATACGCGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGATACCCGCAGCGCCAGGAACCTTGCCGAGGCCCGATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGCCTGGAACTGGTGCAGCACATCCAACAGCGCTTCCCGCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGTCTGCGGGAACTGGTGACCAGCGCCCTGCGCCTGCCGCCGGCCACCGTCCCGACCACCATCG
ATCGCTGCCTGTTGGGCGACTCCCCGCCGATGCGCGGCGTGCGCAAACAGATCGAAAAGCTGGCCCGCAGCCAGGCGCCG
GTTTACATCAGCGGGGAGTCCGGCTGTGGCAAGGAACTGGTGGCACGGCTGATCCACGAACAAGGACCCCGCTCCAGTCA
GGGCTTTGTGCCGGTCAACTGTGGAGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCAGCT
TCAGCGGTGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCCACGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGCATCCTCTGTGCCACCCATAAGGATCTGGACGGCGAAGTCGCCGCCGGACGCTTTCGCCAGGATC
TGTACTATCGACTGAACGTCATAGAACTCCGCGTACCGTCCCTGCGCGAGCGTCGCGAAGACATCGAACCGTTGGCCAAC
CACATGCTCCAGCGCCTGGCGACCAGCACCGGCAACCCCGCCGCCAGACTCCATCCCCAAGCCCTCGAGGCCCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGAGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAAGCAATGGCATCACCGACACCACCAACCCCGAGTTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAGGACGTCGAACGCAAGGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
GCAGCGATTGAAGCTGTCATTTCGGTCAATGCGGTATCGGTTGAAGAAATTGGGGTTGGATTGA
TTGAATACGCGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGATACCCGCAGCGCCAGGAACCTTGCCGAGGCCCGATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGCCTGGAACTGGTGCAGCACATCCAACAGCGCTTCCCGCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGTCTGCGGGAACTGGTGACCAGCGCCCTGCGCCTGCCGCCGGCCACCGTCCCGACCACCATCG
ATCGCTGCCTGTTGGGCGACTCCCCGCCGATGCGCGGCGTGCGCAAACAGATCGAAAAGCTGGCCCGCAGCCAGGCGCCG
GTTTACATCAGCGGGGAGTCCGGCTGTGGCAAGGAACTGGTGGCACGGCTGATCCACGAACAAGGACCCCGCTCCAGTCA
GGGCTTTGTGCCGGTCAACTGTGGAGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCAGCT
TCAGCGGTGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCCACGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCCTGGCGATGCAGGTCAAGCTGCTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGCATCCTCTGTGCCACCCATAAGGATCTGGACGGCGAAGTCGCCGCCGGACGCTTTCGCCAGGATC
TGTACTATCGACTGAACGTCATAGAACTCCGCGTACCGTCCCTGCGCGAGCGTCGCGAAGACATCGAACCGTTGGCCAAC
CACATGCTCCAGCGCCTGGCGACCAGCACCGGCAACCCCGCCGCCAGACTCCATCCCCAAGCCCTCGAGGCCCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGAGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAAGCAATGGCATCACCGACACCACCAACCCCGAGTTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAGGACGTCGAACGCAAGGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
GCAGCGATTGAAGCTGTCATTTCGGTCAATGCGGTATCGGTTGAAGAAATTGGGGTTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.73 |
99.329 |
0.792 |
| pilR | Acinetobacter baumannii strain A118 |
49.237 |
100 |
0.506 |