Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AXG94_RS11055 Genome accession   NZ_CP014262
Coordinates   2599562..2601151 (+) Length   529 a.a.
NCBI ID   WP_024780731.1    Uniprot ID   A0A8B6UNL7
Organism   Pseudomonas corrugata strain RM1-1-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2594562..2606151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG94_RS11040 (AXG94_11030) pgeF 2596362..2597087 (-) 726 WP_055135755.1 peptidoglycan editing factor PgeF -
  AXG94_RS11045 (AXG94_11035) rluD 2597084..2598046 (-) 963 WP_024780729.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AXG94_RS11050 (AXG94_11040) - 2598197..2599213 (+) 1017 WP_055135756.1 outer membrane protein assembly factor BamD -
  AXG94_RS27830 - 2599339..2599572 (+) 234 WP_080686285.1 PP0621 family protein -
  AXG94_RS11055 (AXG94_11045) pilS 2599562..2601151 (+) 1590 WP_024780731.1 two-component system sensor histidine kinase NtrB Regulator
  AXG94_RS11060 (AXG94_11050) pilR 2601148..2602491 (+) 1344 WP_053192135.1 sigma-54-dependent transcriptional regulator Regulator
  AXG94_RS11065 (AXG94_11055) - 2602684..2603049 (-) 366 WP_055135757.1 DUF6124 family protein -
  AXG94_RS11070 (AXG94_11060) thiO 2603681..2604781 (-) 1101 WP_024781125.1 glycine oxidase ThiO -
  AXG94_RS11075 (AXG94_11065) - 2604838..2605239 (-) 402 WP_024781124.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58569.06 Da        Isoelectric Point: 6.7503

>NTDB_id=169934 AXG94_RS11055 WP_024780731.1 2599562..2601151(+) (pilS) [Pseudomonas corrugata strain RM1-1-4]
MTTEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRSPARLF
GLALTDVLLLSWLFFAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLHDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTSLETLNALILQRMRTGILVLDRQHRVQLANESALNLLGRHDLVGQPID
NDSTALVDSLNVWLNNPSLRPPSLSIPGTGLTLQPSFIALGHNEQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRTWLEQFVQQARESMAAH
QQLHLSIAPGDFTTLMDPDQLTQVLDNLLRNAWRHSAEAHERAEAWLELFVDPYSHLPTLDIIDNGPGVTPDQQVHLFEP
FFTTSNQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=169934 AXG94_RS11055 WP_024780731.1 2599562..2601151(+) (pilS) [Pseudomonas corrugata strain RM1-1-4]
GTGACCACTGAGGCTTCAAGCCCTCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAAAACACCCGAAGCCCTGCCCGGCTGTTT
GGCCTGGCCCTGACCGATGTGTTGCTGCTGTCATGGCTGTTCTTCGCGGCAGGCGGTGCCCCCAGTGCCATTGGCAATCT
GCTCATTGTTTCGGTGGCCATTGGCAATACGCTGCTGCGCGGCCGAATCGGCCTGTTGATCGCGGCCGTCGCCACGATCG
GCATCGTCGGGTCGAGTTTCTTCCTTGGCCTGCACGACTCGAACCCTCCCGGCAGTTATTTGCAGGCCGGTACCCTGGGA
GCGCTGTGCTTCGCCGCTGCGCTGCTGGTACAAGGCCTGACCAGGCGACTGGAAGCCAGCGAAACCCTCGCCGAGCAGCG
GGCCAGCGAAGTGACCAGCCTTGAAACCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTTGATC
GCCAACACCGGGTGCAATTGGCCAACGAAAGCGCTTTGAACCTGTTGGGCAGGCACGACCTGGTCGGCCAGCCAATCGAC
AACGACTCCACCGCACTCGTCGACAGTCTGAACGTGTGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGTCCATCCC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATAACGAACAGCATCAAATCCTGGTGTTCCTCGAAG
ATCTGGCCCAGGTCGCCCAACATGCCCAGCAGCTGAAACTCGCCTCGCTGGGGCGCCTCACCGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCAATCAGCCATGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGGCGCCAGC
AAACCGCGCCTCAGCGCCTGGATCTGCGGACCTGGCTCGAGCAGTTTGTCCAACAAGCCCGCGAAAGCATGGCCGCGCAC
CAGCAATTGCATCTGAGCATCGCCCCGGGCGACTTCACCACGCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCGAGGCCCATGAGCGGGCCGAGGCCTGGCTGGAACTGTTCGTCGATCCCT
ACAGCCATCTCCCCACGCTGGACATCATCGACAACGGCCCCGGCGTGACACCGGACCAGCAGGTGCATCTGTTCGAGCCG
TTCTTCACCACCAGCAACCAGGGCACCGGCCTTGGTCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATTACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B6UNL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.155

97.732

0.588

Multiple sequence alignment