Detailed information
Bioinformatically predicted
Overview
| Name | lpp1978 | Type | Machinery gene |
| Locus tag | AXF35_RS10235 | Genome accession | NZ_CP014255 |
| Coordinates | 2241040..2241354 (-) | Length | 104 a.a. |
| NCBI ID | WP_061691663.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. pascullei strain F-4185 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2236040..2246354
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXF35_RS10210 (AXF35_06645) | - | 2236498..2236998 (-) | 501 | WP_061691666.1 | hypothetical protein | - |
| AXF35_RS10215 (AXF35_06640) | - | 2237457..2238317 (+) | 861 | WP_027265082.1 | polysaccharide deacetylase family protein | - |
| AXF35_RS10220 (AXF35_06635) | - | 2238435..2239631 (-) | 1197 | WP_011214245.1 | murein transglycosylase A | - |
| AXF35_RS10225 (AXF35_06630) | lpp1976 | 2239741..2240298 (-) | 558 | WP_061691665.1 | hypothetical protein | Machinery gene |
| AXF35_RS10230 (AXF35_06625) | lpp1977 | 2240295..2241101 (-) | 807 | WP_061691664.1 | PilW family protein | Machinery gene |
| AXF35_RS10235 (AXF35_06620) | lpp1978 | 2241040..2241354 (-) | 315 | WP_061691663.1 | type IV pilus modification PilV family protein | Machinery gene |
| AXF35_RS10240 (AXF35_06615) | hisC | 2241514..2242623 (+) | 1110 | WP_061691662.1 | histidinol-phosphate transaminase | - |
| AXF35_RS10245 (AXF35_06610) | - | 2242660..2243001 (+) | 342 | WP_010947715.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| AXF35_RS10250 (AXF35_06605) | secF | 2243193..2244110 (-) | 918 | WP_010947716.1 | protein translocase subunit SecF | - |
| AXF35_RS10255 (AXF35_06600) | secD | 2244123..2245979 (-) | 1857 | WP_027222177.1 | protein translocase subunit SecD | - |
| AXF35_RS10260 (AXF35_06595) | yajC | 2246001..2246336 (-) | 336 | WP_027222178.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 12335.42 Da Isoelectric Point: 8.4863
>NTDB_id=169833 AXF35_RS10235 WP_061691663.1 2241040..2241354(-) (lpp1978) [Legionella pneumophila subsp. pascullei strain F-4185]
MSKHQGFTLLEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKSQSIIRFYELDAN
MSKHQGFTLLEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKSQSIIRFYELDAN
Nucleotide
Download Length: 315 bp
>NTDB_id=169833 AXF35_RS10235 WP_061691663.1 2241040..2241354(-) (lpp1978) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGAGCAAGCATCAGGGTTTCACTCTATTGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTCG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACATGGTTTAAAAAAAGCCAGTCCATTATACGCTTCTATGAGCTGGATGCTAATTGA
ATGAGCAAGCATCAGGGTTTCACTCTATTGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTCG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACATGGTTTAAAAAAAGCCAGTCCATTATACGCTTCTATGAGCTGGATGCTAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lpp1978 | Legionella pneumophila strain ERS1305867 |
93.269 |
100 |
0.933 |
| lpp1978 | Legionella pneumophila str. Paris |
91.346 |
100 |
0.913 |