Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   AXF35_RS10225 Genome accession   NZ_CP014255
Coordinates   2239741..2240298 (-) Length   185 a.a.
NCBI ID   WP_061691665.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234741..2245298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS10200 (AXF35_06655) - 2235082..2235621 (-) 540 WP_061691668.1 hypothetical protein -
  AXF35_RS10205 (AXF35_06650) - 2235779..2236429 (-) 651 WP_061691667.1 lysoplasmalogenase -
  AXF35_RS10210 (AXF35_06645) - 2236498..2236998 (-) 501 WP_061691666.1 hypothetical protein -
  AXF35_RS10215 (AXF35_06640) - 2237457..2238317 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  AXF35_RS10220 (AXF35_06635) - 2238435..2239631 (-) 1197 WP_011214245.1 murein transglycosylase A -
  AXF35_RS10225 (AXF35_06630) lpp1976 2239741..2240298 (-) 558 WP_061691665.1 hypothetical protein Machinery gene
  AXF35_RS10230 (AXF35_06625) lpp1977 2240295..2241101 (-) 807 WP_061691664.1 PilW family protein Machinery gene
  AXF35_RS10235 (AXF35_06620) lpp1978 2241040..2241354 (-) 315 WP_061691663.1 type IV pilus modification PilV family protein Machinery gene
  AXF35_RS10240 (AXF35_06615) hisC 2241514..2242623 (+) 1110 WP_061691662.1 histidinol-phosphate transaminase -
  AXF35_RS10245 (AXF35_06610) - 2242660..2243001 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  AXF35_RS10250 (AXF35_06605) secF 2243193..2244110 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21664.06 Da        Isoelectric Point: 6.9395

>NTDB_id=169831 AXF35_RS10225 WP_061691665.1 2239741..2240298(-) (lpp1976) [Legionella pneumophila subsp. pascullei strain F-4185]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYASMDCYVQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=169831 AXF35_RS10225 WP_061691665.1 2239741..2240298(-) (lpp1976) [Legionella pneumophila subsp. pascullei strain F-4185]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAAGCACTTAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTCGCGCGTTCACCGTTATTGTATGCAAGCATGGATTGTTATGTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

97.838

100

0.978
  lpp1976 Legionella pneumophila strain ERS1305867

96.757

100

0.968

Multiple sequence alignment