Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AXF35_RS11680 Genome accession   NZ_CP014255
Coordinates   2598143..2598847 (+) Length   234 a.a.
NCBI ID   WP_231955058.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pascullei strain F-4185     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2593143..2603847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF35_RS11655 (AXF35_05230) - 2594313..2595203 (+) 891 WP_027222422.1 lpg2327 family Dot/Icm T4SS effector -
  AXF35_RS11660 (AXF35_05225) - 2595517..2595900 (+) 384 WP_027222423.1 hypothetical protein -
  AXF35_RS11665 (AXF35_05220) - 2596094..2596324 (+) 231 WP_027222424.1 exodeoxyribonuclease VII small subunit -
  AXF35_RS11670 (AXF35_05215) - 2596305..2597201 (+) 897 WP_027222425.1 polyprenyl synthetase family protein -
  AXF35_RS11675 (AXF35_05210) bioC 2597245..2598099 (-) 855 WP_027222426.1 malonyl-ACP O-methyltransferase BioC -
  AXF35_RS11680 (AXF35_05205) comFC 2598143..2598847 (+) 705 WP_231955058.1 ComF family protein Machinery gene
  AXF35_RS11685 (AXF35_05200) - 2598877..2599950 (-) 1074 WP_027222428.1 M50 family metallopeptidase -
  AXF35_RS11690 (AXF35_05195) - 2600007..2600285 (-) 279 WP_027222429.1 hypothetical protein -
  AXF35_RS11695 (AXF35_05190) hemA 2600600..2601874 (+) 1275 WP_027222430.1 glutamyl-tRNA reductase -
  AXF35_RS11700 (AXF35_05185) prfA 2601858..2602946 (+) 1089 WP_027222431.1 peptide chain release factor 1 -
  AXF35_RS11705 (AXF35_05180) prmC 2602939..2603802 (+) 864 WP_027222432.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26837.56 Da        Isoelectric Point: 9.3382

>NTDB_id=169836 AXF35_RS11680 WP_231955058.1 2598143..2598847(+) (comFC) [Legionella pneumophila subsp. pascullei strain F-4185]
MLQKFLSITQNLRLPSICTLCNQLHKSQLAICSYCMEYMKQLGPSCQYCAYPLSDDTYLVCGHCIKKRPLFDKAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPQNAFKPDCLIPVPMHPKRLKQRGFNQAAVLTKLLARQLKIPYDLYHCR
KVINTASQANLDGEQRRKNLHHAFYVSPVTYEHVMIVDDLLTTGSTANEMAYTLKNAGVKRVDICCCARAVAKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=169836 AXF35_RS11680 WP_231955058.1 2598143..2598847(+) (comFC) [Legionella pneumophila subsp. pascullei strain F-4185]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTGCCTTCAATATGCACTCTTTGCAACCAGCTTCACAAAAG
CCAACTTGCAATTTGCTCTTATTGCATGGAATATATGAAACAACTCGGACCTTCCTGTCAATACTGCGCCTACCCCCTTT
CTGATGATACCTACCTGGTTTGTGGTCACTGCATTAAAAAAAGGCCTCTCTTTGATAAGGCCTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACACCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTGCT
TCTTAATGCCTTGCCACAAAACGCATTTAAACCAGACTGTCTAATTCCTGTTCCCATGCATCCCAAACGATTAAAGCAAA
GGGGATTTAACCAAGCTGCTGTATTAACCAAATTATTAGCTCGTCAATTAAAGATCCCTTATGACTTATACCATTGCCGA
AAAGTAATCAATACCGCTTCACAAGCCAACCTCGATGGAGAACAACGAAGGAAAAATTTGCATCATGCTTTTTATGTGTC
GCCTGTAACTTATGAACACGTCATGATTGTAGATGACTTATTAACCACAGGAAGCACAGCCAATGAAATGGCATATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGCGCAAGGGCTGTAGCTAAAAATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(12-64)

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

89.316

100

0.893
  comFC Legionella pneumophila strain ERS1305867

89.286

83.761

0.748

Multiple sequence alignment