Detailed information NTG0169775

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: KO07_RS03400
• Genome accession: NZ_CP014252
• Coordinates: 699556..700035 (+)
• Length: 159 a.a.
• NCBI ID: WP_012951314.1
• Uniprot ID: A0A3A7SS43
• Organism: Listeria monocytogenes strain CFSAN023459
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 694556..705035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KO07_RS03345 (KO07_03335)	-	694766..695122 (+)	357	WP_031641918.1	MerR family transcriptional regulator	-
KO07_RS03350 (KO07_03340)	-	695150..695536 (+)	387	WP_227005132.1	hypothetical protein	-
KO07_RS03355	-	695533..695709 (+)	177	WP_012951305.1	hypothetical protein	-
KO07_RS03360	-	696260..696427 (+)	168	WP_003731842.1	hypothetical protein	-
KO07_RS03365 (KO07_03350)	-	696439..696654 (+)	216	WP_003731843.1	hypothetical protein	-
KO07_RS15625 (KO07_03355)	-	696733..697326 (+)	594	WP_060868932.1	pentapeptide repeat-containing protein	-
KO07_RS03375 (KO07_15600)	-	697369..697470 (+)	102	WP_009932913.1	DNA cytosine methyltransferase	-
KO07_RS03380 (KO07_03360)	-	697454..698062 (+)	609	WP_003731837.1	hypothetical protein	-
KO07_RS03385 (KO07_03365)	-	698074..698640 (+)	567	WP_077915353.1	DUF1642 domain-containing protein	-
KO07_RS03390 (KO07_03370)	-	698637..699098 (+)	462	WP_014601398.1	hypothetical protein	-
KO07_RS03395 (KO07_03380)	-	699277..699555 (+)	279	WP_060868933.1	hypothetical protein	-
KO07_RS03400 (KO07_03385)	ssbA	699556..700035 (+)	480	WP_012951314.1	single-stranded DNA-binding protein	Machinery gene
KO07_RS03405 (KO07_03390)	-	700104..700280 (+)	177	WP_223196704.1	hypothetical protein	-
KO07_RS03410 (KO07_03395)	-	700340..700858 (+)	519	WP_012951316.1	sigma factor-like helix-turn-helix DNA-binding protein	-
KO07_RS03415 (KO07_03400)	-	700855..701397 (+)	543	WP_012951317.1	tyrosine-type recombinase/integrase	-
KO07_RS03420 (KO07_03405)	-	701679..701906 (+)	228	WP_012951318.1	hypothetical protein	-
KO07_RS03425 (KO07_03410)	-	701884..702207 (+)	324	WP_371079501.1	hypothetical protein	-
KO07_RS15750 (KO07_03415)	-	702204..702566 (+)	363	WP_049961585.1	HNH endonuclease signature motif containing protein	-
KO07_RS03435 (KO07_03420)	-	702661..703188 (+)	528	WP_012951321.1	phage terminase small subunit P27 family	-
KO07_RS03440 (KO07_03425)	-	703181..704908 (+)	1728	WP_023552288.1	terminase large subunit	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17489.37 Da
• Isoelectric Point: 4.9719

>NTDB_id=169775 KO07_RS03400 WP_012951314.1 699556..700035(+) (ssbA) [Listeria monocytogenes strain CFSAN023459]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRATTNDYQSKANYSNNAQTSSYESGASQKDGAFVSDSKPIDISDDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=169775 KO07_RS03400 WP_012951314.1 699556..700035(+) (ssbA) [Listeria monocytogenes strain CFSAN023459]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCTGATTTACGTTACACTCCAGCGGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCCGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
CAACCCAGGGAGAGCTACAACGAATGATTATCAAAGCAAAGCTAATTATTCAAACAACGCTCAAACAAGCTCATATGAAT
CGGGTGCGAGCCAGAAAGACGGTGCGTTTGTTAGTGATAGCAAGCCAATCGATATTTCAGATGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A3A7SS43

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.692
ssb	Latilactobacillus sakei subsp. sakei 23K	54.286	100	0.597
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.981	66.667	0.447