Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   BKD09_RS26480 Genome accession   NZ_CP017637
Coordinates   5435908..5438016 (-) Length   702 a.a.
NCBI ID   WP_071913767.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain J5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5430908..5443016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKD09_RS26460 (BKD09_26460) - 5432482..5433252 (+) 771 WP_071913762.1 DUF502 domain-containing protein -
  BKD09_RS26465 (BKD09_26465) - 5433358..5434215 (+) 858 WP_071917446.1 NAD(P)-dependent oxidoreductase -
  BKD09_RS26470 (BKD09_26470) - 5434244..5434765 (-) 522 WP_071913764.1 AAA family ATPase -
  BKD09_RS26475 (BKD09_26475) panE 5434982..5435911 (+) 930 WP_071913765.1 2-dehydropantoate 2-reductase -
  BKD09_RS26480 (BKD09_26480) recG 5435908..5438016 (-) 2109 WP_071913767.1 ATP-dependent DNA helicase RecG Machinery gene
  BKD09_RS26485 (BKD09_26485) - 5438203..5438493 (+) 291 WP_028147879.1 succinate dehydrogenase assembly factor 2 -
  BKD09_RS26490 (BKD09_26490) mfd 5438490..5442007 (+) 3518 Protein_5260 transcription-repair coupling factor -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77189.46 Da        Isoelectric Point: 8.8923

>NTDB_id=169741 BKD09_RS26480 WP_071913767.1 5435908..5438016(-) (recG) [Bradyrhizobium japonicum strain J5]
MRPSLLNPLFAPVTSLPGVGRKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTVDRHRPP
PPRNARAPYLVYASDDTGDVVLTFFRAKPGYVEKLLPMGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAIAKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTSSQREAIAAIANDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFSDLALAVVD
EQHRFGVRERLALTSKGAAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLNEVTDSIGRALEA
GKLVYWICPLVEESEAEGTEHLTNATKRFESLQKRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=169741 BKD09_RS26480 WP_071913767.1 5435908..5438016(-) (recG) [Bradyrhizobium japonicum strain J5]
ATGCGCCCCAGCCTGCTCAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGTCGGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCCGTCCAGGGAACCATGGTGACGCTGGAGGTCACCGTCGATCGCCATCGCCCGCCG
CCGCCGCGCAACGCCCGCGCGCCCTATCTCGTCTATGCCAGCGACGACACCGGCGACGTCGTGCTGACCTTCTTTCGCGC
CAAGCCCGGCTATGTCGAAAAGCTGCTGCCGATGGGCGAGAAGCGCTACGTCTCGGGCACGCTGCAGATGTATGACGGCA
TCCCGCAGATTGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATCGCAAAACTCTCCGGGATTGATCCCGTCTATCCG
CTGACCACGGGTCTGGCGCTCGGCTCGCTGCGACGCGCGGTCGCGCAAGCGCTGCAGAAGCTGCCGGCCCTGCCGGAATG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAGGCGCTCAGCCGCGTGCACCAGCCGGTCGAGC
TGACAGACATCCTGCCCGAAAAACCCTACTGGTCGCGCCTCGCCTTCGACGAGCTCTTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCCCAATTGCGCCGCCCGGCCGGCGTCCGCAACGCCGGCGACGGTCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCATTGACGTCGTCGCAGCGAGAAGCGATCGCCGCGATCGCGAACGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACGGTGGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAGGCCGCGCTGATGGCGCCGACGGAAATTTTGGCGCGGCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
AGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAAGGCAAGGAGCGGCGCGAGCTGTTGGCACAACTCGAGGCCGGCG
AGATCAATCTCCTCGTCGGCACCCATGCGCTGATCCAGGACGACGTGATCTTCAGCGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGGGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGCCGCCGTCGACGTGCTGGTGCTGAGTGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCTCCGAGTTGCGCGAGAAGCCCGCCGGCC
GCCAGCCGATCGAGACCCGCACCATATCGATGAGCCGCCTCAATGAGGTCACGGACAGCATCGGCCGGGCCCTGGAGGCG
GGCAAGCTGGTCTACTGGATCTGCCCGCTGGTCGAGGAATCCGAGGCTGAAGGCACCGAGCACCTGACCAATGCGACCAA
ACGCTTCGAGAGCTTGCAAAAGCGTTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GTGTGATGGGCCAGTTCGCCGCCCATGAGATCGGCCTTCTGGTTGCGACCACCGTGGTCGAGGTTGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGTTTTGGACTGGCCCAGTTGCACCAGCTCCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCTTGCTGTACAGCGAGCCGCTCGGCGAGATGTCGAAGGCGCGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTTCGCATCGCCGAGGAAGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTCGGCGTGCGCCAG
AGCGGCCTGCCCGGCTACCGCATCGCGCGCTCGGAGGTGCACGGCCAGCTCATCACCCAGGCTAGAGACGAGGCGCTGCG
GATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGCGGCGAGGCGCTGCGGTGCCTGCTGTATCTCTACGAGCGGGACG
AGGCGATCCCGCTGATCGGAGCGGGTTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(274-430)

Helicase conserved C-terminal domain (Helicase_C)

(501-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)

RecG wedge domain (RecG_wedge)

(18-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.857

92.735

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

39.021

96.011

0.375
  recG/mmsA Streptococcus pneumoniae R6

38.838

93.162

0.362
  recG/mmsA Streptococcus pneumoniae R36A

38.838

93.162

0.362

Multiple sequence alignment