Detailed information NTG0169726

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: CG42_RS00530
• Genome accession: NZ_CP014250
• Coordinates: 96578..97057 (+)
• Length: 159 a.a.
• NCBI ID: WP_060868980.1
• Uniprot ID: -
• Organism: Listeria monocytogenes strain CFSAN010068 isolate MD3882
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 91578..102057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG42_RS00480 (CG42_00450)	-	92073..92786 (+)	714	WP_060868976.1	N-6 DNA methylase	-
CG42_RS00485 (CG42_00455)	-	92797..93741 (+)	945	WP_060868977.1	site-specific integrase	-
CG42_RS00490 (CG42_00460)	-	93754..94434 (+)	681	WP_031643750.1	hypothetical protein	-
CG42_RS00495 (CG42_00465)	-	94431..94988 (+)	558	WP_031643752.1	DUF1642 domain-containing protein	-
CG42_RS00500	-	94985..95131 (+)	147	WP_165442474.1	hypothetical protein	-
CG42_RS00505 (CG42_00470)	-	95150..95356 (+)	207	WP_031643753.1	hypothetical protein	-
CG42_RS00510 (CG42_00475)	-	95343..95759 (+)	417	WP_031643755.1	YopX family protein	-
CG42_RS00515 (CG42_00480)	-	95756..95938 (+)	183	WP_031643756.1	hypothetical protein	-
CG42_RS00520 (CG42_00485)	-	95935..96336 (+)	402	WP_060868978.1	hypothetical protein	-
CG42_RS00525 (CG42_00490)	-	96333..96581 (+)	249	WP_060868979.1	ASCH/PUA domain-containing protein	-
CG42_RS00530 (CG42_00495)	ssbA	96578..97057 (+)	480	WP_060868980.1	single-stranded DNA-binding protein	Machinery gene
CG42_RS00535 (CG42_00500)	-	97076..97267 (+)	192	WP_003722551.1	hypothetical protein	-
CG42_RS00540 (CG42_00505)	-	97212..97616 (+)	405	WP_060868981.1	DUF1064 domain-containing protein	-
CG42_RS00545 (CG42_00510)	-	97620..98006 (+)	387	WP_060577781.1	DUF2481 family protein	-
CG42_RS15335	-	98025..98150 (+)	126	WP_256094150.1	hypothetical protein	-
CG42_RS00550 (CG42_00515)	-	98172..98609 (+)	438	WP_060868982.1	ArpU family phage packaging/lysis transcriptional regulator	-
CG42_RS00555 (CG42_00520)	-	98636..99238 (+)	603	WP_003723794.1	hypothetical protein	-
CG42_RS00560 (CG42_00525)	-	99426..100058 (+)	633	WP_031670269.1	hypothetical protein	-
CG42_RS00565 (CG42_00530)	-	100139..100366 (+)	228	WP_012951944.1	hypothetical protein	-
CG42_RS00570 (CG42_00535)	terS	100406..101146 (+)	741	WP_031670271.1	phage terminase small subunit	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17762.58 Da
• Isoelectric Point: 5.2868

>NTDB_id=169726 CG42_RS00530 WP_060868980.1 96578..97057(+) (ssbA) [Listeria monocytogenes strain CFSAN010068 isolate MD3882]
MMNRVVLVGRLTKDPDLRYTPASVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDSDGKRVFVTEVVAESVQFLESRNHTEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFANEGKPIDINEDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=169726 CG42_RS00530 WP_060868980.1 96578..97057(+) (ssbA) [Listeria monocytogenes strain CFSAN010068 isolate MD3882]
ATAATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCAGATTTACGTTACACTCCGGCTAGCGTGGCAGTTGC
GACTTTTACTTTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTTAAGAAGGGAAGCATGGCAGGTGTTGATGGTCGAATTCAAACCCGT
AATTACGAGGACAGCGACGGTAAACGCGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAGTCCAGAAA
CCACACAGAAGGCGCTACATCGAATAATTACCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATAGAG
CGGATACGAGCCAGAAGAGCGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAACGAAGACGATTTGCCGTTTTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	61.628	100	0.667
ssb	Latilactobacillus sakei subsp. sakei 23K	56.471	100	0.604
ssbB	Bacillus subtilis subsp. subtilis str. 168	60.714	70.44	0.428