Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AXF11_RS04365 Genome accession   NZ_CP014231
Coordinates   952316..953020 (+) Length   234 a.a.
NCBI ID   WP_068155292.1    Uniprot ID   A0A120KNQ5
Organism   Leptotrichia sp. oral taxon 847 strain F0260     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 947316..958020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF11_RS04340 (AXF11_04340) - 947317..948075 (-) 759 WP_068155281.1 ABC transporter ATP-binding protein -
  AXF11_RS04345 (AXF11_04345) - 948094..949191 (-) 1098 WP_082729380.1 branched-chain amino acid ABC transporter permease -
  AXF11_RS04350 (AXF11_04350) - 949214..950110 (-) 897 WP_068155284.1 branched-chain amino acid ABC transporter permease -
  AXF11_RS04355 (AXF11_04355) - 950242..951357 (-) 1116 WP_068155288.1 ABC transporter substrate-binding protein -
  AXF11_RS04360 (AXF11_04360) - 951764..952108 (-) 345 WP_068155290.1 hypothetical protein -
  AXF11_RS04365 (AXF11_04365) scnR 952316..953020 (+) 705 WP_068155292.1 response regulator transcription factor Regulator
  AXF11_RS04370 (AXF11_04370) - 953151..954410 (+) 1260 WP_231724765.1 HAMP domain-containing sensor histidine kinase -
  AXF11_RS04375 (AXF11_04375) - 954639..955046 (+) 408 WP_068155298.1 polyketide cyclase -
  AXF11_RS04380 (AXF11_04380) - 955059..955502 (+) 444 WP_068155301.1 MarR family transcriptional regulator -
  AXF11_RS04385 (AXF11_04385) - 956042..956698 (+) 657 WP_068155303.1 thiamine diphosphokinase -
  AXF11_RS04390 (AXF11_04390) - 956718..957956 (+) 1239 WP_068155305.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26812.24 Da        Isoelectric Point: 6.2737

>NTDB_id=169661 AXF11_RS04365 WP_068155292.1 952316..953020(+) (scnR) [Leptotrichia sp. oral taxon 847 strain F0260]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKYVEEKQPDLAILDVMLPDGNGFELLEKLRKASN
YPVLFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSRGEIIKDNKIIPLTA
KEYELLQTLYRNAGHIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=169661 AXF11_RS04365 WP_068155292.1 952316..953020(+) (scnR) [Leptotrichia sp. oral taxon 847 strain F0260]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGCGTGAAGGAAACTATGAAATACGTTGAAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGATGGGAACGGTTTTGAATTACTGGAAAAGTTGAGAAAAGCCAGTAAT
TATCCAGTATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAGGGCTTTGGATTAGGGGCGGATGACTACAT
TGTAAAGCCTTTTTTGCCAAAAGAGCTTTTGTTTAGAATTACAGCAATTTTGCGACGAACTTACAAAAAAGAAAGTCCAA
TTGTAAATTTAAATGGCTGTCAAATTGATTTTTCTCGTGGAGAAATTATAAAAGATAATAAAATTATACCGTTAACTGCA
AAGGAATATGAATTATTACAGACTCTTTATCGAAACGCAGGACATATTGTAACCATAGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTCTATACAAATTCACTGATGACACATATAAGACGCATTAGAGAAAAAATTGAAATTAACCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-229)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120KNQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.018

95.299

0.496
  vicR Streptococcus mutans UA159

40.517

99.145

0.402
  micA Streptococcus pneumoniae Cp1015

38.197

99.573

0.38

Multiple sequence alignment